{
"@context": "/terms/",
"@id": "/configuration-files/IGVFFI9376SWYR/",
"@type": [
"ConfigurationFile",
"File",
"Item"
],
"accession": "IGVFFI9376SWYR",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp12_rna_10x3_NGS6"
],
"assay_titles": [
"10x multiome with MULTI-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"checkfiles_version": "v16",
"content_md5sum": "4e1b704b2deb6b3063e735dd938967e0",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T02:31:28.757164+00:00",
"file_format": "yaml",
"file_set": {
"@id": "/measurement-sets/IGVFDS5862OZVJ/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS5862OZVJ",
"assay_term": {
"@id": "/assay-terms/OBI_0003109/",
"term_name": "single-nucleus RNA sequencing assay"
},
"file_set_type": "experimental data",
"samples": [
{
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"@type": [
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"Sample",
"Item"
],
"accession": "IGVFSM7114MTSH",
"classifications": [
"differentiated cell specimen",
"tissue",
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/CL_0000236/",
"status": "released",
"term_name": "B cell"
},
{
"@id": "/sample-terms/UBERON_0002371/",
"status": "released",
"term_name": "bone marrow"
}
],
"status": "released",
"summary": "multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"status": "released",
"summary": "single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
},
"file_size": 1397,
"gene_list_for": [],
"href": "/configuration-files/IGVFFI9376SWYR/@@download/IGVFFI9376SWYR.yaml.gz",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"loci_list_for": [],
"md5sum": "9aa9248c97ae86b0a39affb2d5223bfb",
"quality_metrics": [],
"release_timestamp": "2025-03-22T00:38:45.473048+00:00",
"s3_uri": "s3://igvf-files/2024/09/18/ef6231e0-722d-4a93-8e27-56bb9749cd4a/IGVFFI9376SWYR.yaml.gz",
"schema_version": "7",
"seqspec_of": [
"/sequence-files/IGVFFI8223TUTE/",
"/sequence-files/IGVFFI4769HOXH/",
"/sequence-files/IGVFFI0777OJJX/",
"/sequence-files/IGVFFI0865BLKK/"
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_rna_10x3_NGS6_rna_seqspec.yaml.gz",
"summary": "seqspec of IGVFFI8223TUTE, IGVFFI4769HOXH, IGVFFI0777OJJX, IGVFFI0865BLKK",
"upload_status": "validated",
"uuid": "ef6231e0-722d-4a93-8e27-56bb9749cd4a",
"validate_onlist_files": true
}