IGVFFI9306BOXQ

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI9306BOXQ/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI9306BOXQ",
10    "aliases": [
11        "ansuman-satpathy:seqspec_igvf_exp9_multi_10x3_NGS1"
12    ],
13    "assay_titles": [
14        "10x multiome with MULTI-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v16",
22    "content_md5sum": "ec47fe0be90a7e6b9cbdf9786c5d3332",
23    "content_type": "seqspec",
24    "creation_timestamp": "2024-09-18T02:44:40.365961+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/auxiliary-sets/IGVFDS4415ANKP/",
28        "@type": [
29            "AuxiliarySet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS4415ANKP",
34        "file_set_type": "lipid-conjugated oligo sequencing",
35        "samples": [
36            {
37                "@id": "/multiplexed-samples/IGVFSM2794HHHZ/",
38                "@type": [
39                    "MultiplexedSample",
40                    "Sample",
41                    "Item"
42                ],
43                "accession": "IGVFSM2794HHHZ",
44                "classifications": [
45                    "differentiated cell specimen",
46                    "multiplexed sample"
47                ],
48                "disease_terms": [],
49                "modifications": [],
50                "sample_terms": [
51                    {
52                        "@id": "/sample-terms/CL_0000236/",
53                        "status": "released",
54                        "term_name": "B cell"
55                    }
56                ],
57                "status": "released",
58                "summary": "multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples",
59                "taxa": "Homo sapiens",
60                "treatments": []
61            }
62        ],
63        "status": "released",
64        "summary": "lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)"
65    },
66    "file_size": 1335,
67    "gene_list_for": [],
68    "href": "/configuration-files/IGVFFI9306BOXQ/@@download/IGVFFI9306BOXQ.yaml.gz",
69    "input_file_for": [],
70    "integrated_in": [],
71    "lab": {
72        "@id": "/labs/ansuman-satpathy/",
73        "title": "Ansuman Satpathy, Stanford"
74    },
75    "loci_list_for": [],
76    "md5sum": "6860e265da9cf3a59609d03112a09644",
77    "quality_metrics": [],
78    "release_timestamp": "2025-03-22T00:38:09.829867+00:00",
79    "s3_uri": "s3://igvf-files/2024/09/18/8fa1e230-f8df-4577-aa20-065d23a549c6/IGVFFI9306BOXQ.yaml.gz",
80    "schema_version": "7",
81    "seqspec_of": [
82        "/sequence-files/IGVFFI8726ELZJ/",
83        "/sequence-files/IGVFFI8963NIFY/",
84        "/sequence-files/IGVFFI7409ZDGW/",
85        "/sequence-files/IGVFFI6870TTEL/"
86    ],
87    "status": "released",
88    "submitted_by": {
89        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
90        "title": "Christopher Mcginnis"
91    },
92    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp9_multi_10x3_NGS1_multi_seqspec.yaml.gz",
93    "summary": "seqspec of IGVFFI8726ELZJ, IGVFFI8963NIFY, IGVFFI7409ZDGW, IGVFFI6870TTEL",
94    "upload_status": "validated",
95    "uuid": "8fa1e230-f8df-4577-aa20-065d23a549c6",
96    "validate_onlist_files": false
97}