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IGVFFI9276QSJE

released
validated
File Set
IGVFDS8748OHPQ(gRNA sequencing for mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci)
Summary
seqspec of IGVFFI2373VGQQ, IGVFFI6523ECXR, IGVFFI5632DOTG
File Format
yaml
Content Type
seqspec
Aliases
jesse-engreitz:seqspecfile_crispr_CRUDO_TAPseq_Auxin0hrs-Rep2-S1
md5sum
e58ffc4f2b5d58985129a410f68a0c06
Content MD5sum
ee79b9108d9499d28278f4a6e13838d8
File Size
1.2 KB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/tapseq_seqspec.out.Auxin0hrs-Rep2-S1.crispr.yaml.gz

seqspec File Of

3 items
fastq
reads
1
1
75 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
1
139 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
1
25 MB
Jesse Engreitz, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford