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IGVFFI9238INBM

released
validated
File Set
IGVFDS7571FXYP(single-cell RNA sequencing assay (SHARE-seq))
Summary
seqspec of IGVFFI2642WOZN, IGVFFI3539IOGW
File Format
yaml
Content Type
seqspec
Aliases
buenrostro-bernstein:SS-LS_3809_seqspec
md5sum
d988443b77bac355c7c001ed6cea89dc
Content MD5sum
c81b6151915990fe6c9ee37faeb6f905
File Size
1.3 KB
Submitted File Name
gs://sw-igvf-submission/seqspec-v3/pilot-mouse-brain-new-pkr/SS-LS_3809_seqspec.yaml.gz
Checkfiles Version
v20
Attribution
Jason Buenrostro, Broad

seqspec File Of

2 items
Read Names
fastq
reads
3809
Read 1
H22KKDRX5
918 MB
Jason Buenrostro, Broad
validated
fastq
reads
3809
Read 2, Barcode index
H22KKDRX5
1.5 GB
Jason Buenrostro, Broad
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 436)

Files Derived From This File

2 items
tar
kallisto single cell RNAseq output
unfiltered cell by gene in kallisto single cell RNAseq output
Jason Buenrostro, Broad
6.8 GB
validated
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
1.2 GB
validated