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IGVFFI9214EKMS

released
validated
File Set
IGVFDS6896VSKX(mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci)
Summary
seqspec of IGVFFI4474HZGX, IGVFFI2763QTWE, IGVFFI8354TIRT
File Format
yaml
Content Type
seqspec
Aliases
jesse-engreitz:seqspecfile_rna_CRUDO_TAPseq_Auxin6hrs-Rep1-S3
md5sum
04dd1b33d87e60cc786da676dd0c5ede
Content MD5sum
4d56f9afaf3bb7297ecb6834474027c8
File Size
1.0 KB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/tapseq_seqspec.out.Auxin6hrs-Rep1-S3.rna.yaml.gz

seqspec File Of

3 items
fastq
reads
1
3
348 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
3
1.2 GB
Jesse Engreitz, Stanford
validated
fastq
reads
1
3
2.7 GB
Jesse Engreitz, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford