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INDEXED
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ConfigurationFile
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IGVFFI9131WYLW
IGVFFI9131WYLW
released
validated
Json view
File Set
IGVFDS8192PAOP
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI9344ZUUY, IGVFFI3900KETJ, IGVFFI2773UHYP, IGVFFI3700SAVO
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp6_atac_10x3_NGS2
md5sum
cfb69caa90d9b03e5a9856c6f495832e
Content MD5sum
eb7503c890ed80aa4db124fd946b7425
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp6_atac_10x3_NGS2_atac_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI2773UHYP
fastq
reads
1
Read 1
Illumina NovaSeq X
223JH2LT3
6
9.6 GB
Ansuman Satpathy, Stanford
validated
IGVFFI3700SAVO
fastq
reads
1
Read 2
Illumina NovaSeq X
223JH2LT3
6
9.6 GB
Ansuman Satpathy, Stanford
validated
IGVFFI3900KETJ
fastq
reads
1
Barcode index
Illumina NovaSeq X
223JH2LT3
6
5.2 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9344ZUUY
fastq
reads
1
Illumina NovaSeq X
223JH2LT3
6
2.1 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM8276PHGD
MultiplexedSample
H1-hESC
multiplexed sample: H1-hESC differentiated cell specimen induced to islet of Langerhans for 18 days, male, Homo sapiens; H1-hESC differentiated cell specimen induced to islet of Langerhans for 7 days, male, Homo sapiens; ... and 6 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford