IGVFFI9106OAKW

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI9106OAKW/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI9106OAKW",
10    "aliases": [
11        "buenrostro-bernstein:SS-LS_8572_seqspec"
12    ],
13    "assay_titles": [
14        "SHARE-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011986/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v20",
22    "content_md5sum": "28dcd11616fd214b3c215ac7af6e9928",
23    "content_type": "seqspec",
24    "creation_timestamp": "2025-03-28T18:26:44.441486+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS2347LVUE/",
28        "@type": [
29            "MeasurementSet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS2347LVUE",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0002764/",
36            "term_name": "single-cell ATAC-seq"
37        },
38        "controlled_access": true,
39        "data_use_limitation_summaries": [
40            "GRU"
41        ],
42        "file_set_type": "experimental data",
43        "samples": [
44            {
45                "@id": "/in-vitro-systems/IGVFSM2301XMMC/",
46                "@type": [
47                    "InVitroSystem",
48                    "Biosample",
49                    "Sample",
50                    "Item"
51                ],
52                "accession": "IGVFSM2301XMMC",
53                "classifications": [
54                    "cell line",
55                    "pooled cell specimen"
56                ],
57                "sample_terms": [
58                    {
59                        "@id": "/sample-terms/EFO_0004905/",
60                        "status": "released",
61                        "term_name": "induced pluripotent stem cell"
62                    }
63                ],
64                "status": "released",
65                "summary": "Homo sapiens induced pluripotent stem pooled cell specimen (cellular sub pool: SS-PKR 180)",
66                "taxa": "Homo sapiens"
67            }
68        ],
69        "status": "released",
70        "summary": "single-cell ATAC-seq (SHARE-seq)"
71    },
72    "file_size": 1331,
73    "gene_list_for": [],
74    "href": "/configuration-files/IGVFFI9106OAKW/@@download/IGVFFI9106OAKW.yaml.gz",
75    "input_file_for": [],
76    "integrated_in": [],
77    "lab": {
78        "@id": "/labs/jason-buenrostro/",
79        "title": "Jason Buenrostro, Broad"
80    },
81    "loci_list_for": [],
82    "md5sum": "85bfae896430908e34127cebf5c0b377",
83    "quality_metrics": [],
84    "release_timestamp": "2025-04-22T04:10:54.369711+00:00",
85    "s3_uri": "s3://igvf-files/2025/03/28/28728636-7903-42da-b0ad-a2b4cf590fe1/IGVFFI9106OAKW.yaml.gz",
86    "schema_version": "7",
87    "seqspec_of": [
88        "/sequence-files/IGVFFI7289PCDN/",
89        "/sequence-files/IGVFFI0326XLUV/",
90        "/sequence-files/IGVFFI4961THSY/"
91    ],
92    "status": "released",
93    "submitted_by": {
94        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
95        "title": "Siddarth Wekhande"
96    },
97    "submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI7289PCDN_seqspec.yaml.gz",
98    "summary": "seqspec of IGVFFI7289PCDN, IGVFFI0326XLUV, IGVFFI4961THSY",
99    "upload_status": "validated",
100    "uuid": "28728636-7903-42da-b0ad-a2b4cf590fe1",
101    "validate_onlist_files": true
102}