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INDEXED
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ConfigurationFile
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IGVFFI8916OGJX
IGVFFI8916OGJX
released
validated
Json view
File Set
IGVFDS3345HOBS
(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI9895KCQB, IGVFFI8506NTJE, IGVFFI6375VQAK, IGVFFI5236CHYD
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp15_rna_10x2_NGS2
md5sum
047e0b22b6e4b160c1670208ee62e2b8
Content MD5sum
c6567974846556c42908e157340290b4
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp15_rna_10x2_NGS2_rna_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI5236CHYD
fastq
reads
1
Illumina NovaSeq X
22NCFCLT3
2
2.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI6375VQAK
fastq
reads
1
Illumina NovaSeq X
22NCFCLT3
2
2.0 GB
Ansuman Satpathy, Stanford
validated
IGVFFI8506NTJE
fastq
reads
1
Read 2
Illumina NovaSeq X
22NCFCLT3
2
18 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9895KCQB
fastq
reads
1
Read 1
Illumina NovaSeq X
22NCFCLT3
2
8.1 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM0825LHRL
MultiplexedSample
GM25256 (WTC-11)
multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days, male, Homo sapiens; ... and 10 more samples
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Ansuman Satpathy, Stanford