{
"@context": "/terms/",
"@id": "/configuration-files/IGVFFI8889RNMR/",
"@type": [
"ConfigurationFile",
"File",
"Item"
],
"accession": "IGVFFI8889RNMR",
"aliases": [
"buenrostro-bernstein:SS-LS_8313_seqspec"
],
"assay_titles": [
"SHARE-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG011986/",
"component": "mapping"
},
"checkfiles_version": "v17",
"content_md5sum": "e4e0c92f488a23724c385d5f344cb18b",
"content_type": "seqspec",
"creation_timestamp": "2025-03-07T19:59:31.280662+00:00",
"file_format": "yaml",
"file_set": {
"@id": "/measurement-sets/IGVFDS7535KDYJ/",
"@type": [
"MeasurementSet",
"FileSet",
"Item"
],
"accession": "IGVFDS7535KDYJ",
"assay_term": {
"@id": "/assay-terms/OBI_0002764/",
"term_name": "single-cell ATAC-seq"
},
"file_set_type": "experimental data",
"samples": [
{
"@id": "/tissues/IGVFSM5455KAQH/",
"@type": [
"Tissue",
"Biosample",
"Sample",
"Item"
],
"accession": "IGVFSM5455KAQH",
"classifications": [
"tissue"
],
"sample_terms": [
{
"@id": "/sample-terms/NTR_0000646/",
"status": "released",
"term_name": "left cerebral cortex"
}
],
"status": "released",
"summary": "Mus musculus B6J (male) left cerebral cortex tissue (cellular sub pool: SS-PKR 574)",
"taxa": "Mus musculus"
}
],
"status": "released",
"summary": "single-cell ATAC-seq (SHARE-seq)"
},
"file_size": 1252,
"gene_list_for": [],
"href": "/configuration-files/IGVFFI8889RNMR/@@download/IGVFFI8889RNMR.yaml.gz",
"input_file_for": [
"/alignment-files/IGVFFI5262CDXF/",
"/tabular-files/IGVFFI2837NWOU/"
],
"integrated_in": [],
"lab": {
"@id": "/labs/jason-buenrostro/",
"title": "Jason Buenrostro, Broad"
},
"loci_list_for": [],
"md5sum": "913ead4190d89cc5b5895bf47f8dbafb",
"quality_metrics": [],
"release_timestamp": "2025-03-28T21:22:03.137356+00:00",
"s3_uri": "s3://igvf-files/2025/03/07/0d5b50b0-ed7e-4a2c-afa1-487981097fbc/IGVFFI8889RNMR.yaml.gz",
"schema_version": "7",
"seqspec_of": [
"/sequence-files/IGVFFI3640FQLT/",
"/sequence-files/IGVFFI5704OFGZ/"
],
"status": "released",
"submitted_by": {
"@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
"title": "Siddarth Wekhande"
},
"submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/mouse-bridge/SS-LS_8313_seqspec.yaml.gz",
"summary": "seqspec of IGVFFI3640FQLT, IGVFFI5704OFGZ",
"upload_status": "validated",
"uuid": "0d5b50b0-ed7e-4a2c-afa1-487981097fbc",
"validate_onlist_files": true
}