IGVFFI8807NPBH

released
validated
{
    "@context": "/terms/",
    "@id": "/configuration-files/IGVFFI8807NPBH/",
    "@type": [
        "ConfigurationFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI8807NPBH",
    "assay_titles": [
        "Parse SPLiT-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012077/",
        "component": "mapping"
    },
    "checkfiles_version": "v17",
    "content_md5sum": "dab1da1ce809559c6a32e8b2a268379c",
    "content_type": "seqspec",
    "creation_timestamp": "2024-09-18T17:20:01.373831+00:00",
    "file_format": "yaml",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS1771HEWD/",
        "@type": [
            "MeasurementSet",
            "FileSet",
            "Item"
        ],
        "accession": "IGVFDS1771HEWD",
        "assay_term": {
            "@id": "/assay-terms/OBI_0003109/",
            "term_name": "single-nucleus RNA sequencing assay"
        },
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM7124LAJZ/",
                "@type": [
                    "MultiplexedSample",
                    "Sample",
                    "Item"
                ],
                "accession": "IGVFSM7124LAJZ",
                "classifications": [
                    "tissue",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/UBERON_0000473/",
                        "status": "released",
                        "term_name": "testis"
                    },
                    {
                        "@id": "/sample-terms/UBERON_0000992/",
                        "status": "released",
                        "term_name": "ovary"
                    },
                    {
                        "@id": "/sample-terms/UBERON_0000993/",
                        "status": "released",
                        "term_name": "oviduct"
                    },
                    {
                        "@id": "/sample-terms/UBERON_0001301/",
                        "status": "released",
                        "term_name": "epididymis"
                    },
                    {
                        "@id": "/sample-terms/UBERON_0002369/",
                        "status": "released",
                        "term_name": "adrenal gland"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: Mus musculus AJ (male, 69 days) epididymis tissue; Mus musculus PWK/PhJ (female, 69 days) oviduct tissue; ... and 190 more samples",
                "taxa": "Mus musculus",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "Parse SPLiT-seq"
    },
    "file_size": 1353,
    "gene_list_for": [],
    "href": "/configuration-files/IGVFFI8807NPBH/@@download/IGVFFI8807NPBH.yaml.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ali-mortazavi/",
        "title": "Ali Mortazavi, UCI"
    },
    "loci_list_for": [],
    "md5sum": "2d8086265407f3cb68caef7cef445e6c",
    "quality_metrics": [],
    "release_timestamp": "2025-04-19T03:42:26.498014+00:00",
    "s3_uri": "s3://igvf-files/2024/09/18/87f5b815-c98b-47cc-8320-f166937caccb/IGVFFI8807NPBH.yaml.gz",
    "schema_version": "7",
    "seqspec_of": [
        "/sequence-files/IGVFFI8636VWDT/",
        "/sequence-files/IGVFFI9229GRTK/"
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
        "title": "Diane Trout"
    },
    "summary": "seqspec of IGVFFI8636VWDT, IGVFFI9229GRTK",
    "upload_status": "validated",
    "uuid": "87f5b815-c98b-47cc-8320-f166937caccb",
    "validate_onlist_files": true
}