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INDEXED
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ConfigurationFile
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IGVFFI8798PBOH
IGVFFI8798PBOH
released
validated
Json view
File Set
IGVFDS4338ZSWY
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI5766MIHS, IGVFFI3692BTHU, IGVFFI7380SYVV, IGVFFI2853SSND
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp15_atac_10x1_NGS1
md5sum
956aa6bb301e94acfb1181137ef3a70e
Content MD5sum
52e5111ed23052c4968b31557a487d9e
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp15_atac_10x1_NGS1_atac_seqspec.yaml.gz
Checkfiles Version
v16
Attribution
Ansuman Satpathy, Stanford
(
HG011972
—
Jesse Engreitz
)
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI2853SSND
fastq
reads
1
Illumina NovaSeq X
22NHMTLT3
2
2.7 GB
Ansuman Satpathy, Stanford
validated
IGVFFI3692BTHU
fastq
reads
1
Barcode index
Illumina NovaSeq X
22NHMTLT3
2
6.4 GB
Ansuman Satpathy, Stanford
validated
IGVFFI5766MIHS
fastq
reads
1
Read 1
Illumina NovaSeq X
22NHMTLT3
2
12 GB
Ansuman Satpathy, Stanford
validated
IGVFFI7380SYVV
fastq
reads
1
Read 2
Illumina NovaSeq X
22NHMTLT3
2
12 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM2174QALS
MultiplexedSample
GM25256 (WTC-11)
multiplexed sample: Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 18 days; Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to liver for 13 days; ... and 10 more samples