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INDEXED
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ConfigurationFile
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IGVFFI8793WAEB
IGVFFI8793WAEB
released
validated
Json view
File Set
IGVFDS4602PSGH
(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI9892DBGM, IGVFFI8509TPHN, IGVFFI9057CJDM, IGVFFI3371AGWL
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp3_rna_10x2_NGS2
md5sum
08fa9041325901ab0235187978201d75
Content MD5sum
04bdbb7e99d5af5b216df7b3accd2a2e
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp3_rna_10x2_NGS2_rna_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI3371AGWL
fastq
reads
1
Read 2
Illumina NovaSeq X
223JJCLT3
2
12 GB
Ansuman Satpathy, Stanford
validated
IGVFFI8509TPHN
fastq
reads
1
Illumina NovaSeq X
223JJCLT3
2
1.5 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9057CJDM
fastq
reads
1
Read 1
Illumina NovaSeq X
223JJCLT3
2
5.3 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9892DBGM
fastq
reads
1
Illumina NovaSeq X
223JJCLT3
2
1.5 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM8818QZOF
MultiplexedSample
GM25256 (WTC-11)
,
H9
,
HepG2
multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford