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INDEXED
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ConfigurationFile
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IGVFFI8763QYLN
IGVFFI8763QYLN
released
validated
Json view
File Set
IGVFDS9133EBOD
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI8669UMUG, IGVFFI7200NQDY, IGVFFI1441LDPM, IGVFFI0651MVYR
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp17_atac_10x4_NGS4
md5sum
78ce0a11fcde4e3f0212fc950c6ab077
Content MD5sum
fc023241fd054c81211d6da64f687300
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp17_atac_10x4_NGS4_atac_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0651MVYR
fastq
reads
1
Illumina NovaSeq X
22NF33LT3
8
1.7 GB
Ansuman Satpathy, Stanford
validated
IGVFFI1441LDPM
fastq
reads
1
Read 2
Illumina NovaSeq X
22NF33LT3
8
7.0 GB
Ansuman Satpathy, Stanford
validated
IGVFFI7200NQDY
fastq
reads
1
Barcode index
Illumina NovaSeq X
22NF33LT3
8
4.0 GB
Ansuman Satpathy, Stanford
validated
IGVFFI8669UMUG
fastq
reads
1
Read 1
Illumina NovaSeq X
22NF33LT3
8
7.2 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM9149ZACE
MultiplexedSample
RUES2
multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Ansuman Satpathy, Stanford