IGVFFI8721UVPE

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI8721UVPE/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI8721UVPE",
10    "aliases": [
11        "ansuman-satpathy:seqspec_igvf_exp16_atac_10x3_NGS4"
12    ],
13    "assay_titles": [
14        "10x multiome with MULTI-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011972/",
19        "component": "functional characterization"
20    },
21    "checkfiles_version": "v16",
22    "content_md5sum": "e2c14e4b215342465516bf8a0eff102b",
23    "content_type": "seqspec",
24    "creation_timestamp": "2025-02-26T01:38:21.479406+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS4856BVTB/",
28        "@type": [
29            "MeasurementSet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS4856BVTB",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0002762/",
36            "term_name": "single-nucleus ATAC-seq"
37        },
38        "file_set_type": "experimental data",
39        "samples": [
40            {
41                "@id": "/multiplexed-samples/IGVFSM5332SKYG/",
42                "@type": [
43                    "MultiplexedSample",
44                    "Sample",
45                    "Item"
46                ],
47                "accession": "IGVFSM5332SKYG",
48                "classifications": [
49                    "differentiated cell specimen",
50                    "multiplexed sample"
51                ],
52                "disease_terms": [],
53                "modifications": [],
54                "sample_terms": [
55                    {
56                        "@id": "/sample-terms/EFO_0004905/",
57                        "status": "released",
58                        "term_name": "induced pluripotent stem cell"
59                    }
60                ],
61                "status": "released",
62                "summary": "multiplexed sample: Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 11 days; Homo sapiens (mixed sex) induced pluripotent stem differentiated cell specimen induced to islet of Langerhans for 3 days; ... and 6 more samples",
63                "taxa": "Homo sapiens",
64                "treatments": []
65            }
66        ],
67        "status": "released",
68        "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
69    },
70    "file_size": 1377,
71    "gene_list_for": [],
72    "href": "/configuration-files/IGVFFI8721UVPE/@@download/IGVFFI8721UVPE.yaml.gz",
73    "input_file_for": [],
74    "integrated_in": [],
75    "lab": {
76        "@id": "/labs/ansuman-satpathy/",
77        "title": "Ansuman Satpathy, Stanford"
78    },
79    "loci_list_for": [],
80    "md5sum": "ca94af8a417576cb772ec18af67d3be0",
81    "quality_metrics": [],
82    "release_timestamp": "2025-03-22T00:41:22.711739+00:00",
83    "s3_uri": "s3://igvf-files/2025/02/26/47bde3d1-e776-4f61-9a61-9a09f9b84b35/IGVFFI8721UVPE.yaml.gz",
84    "schema_version": "7",
85    "seqspec_of": [
86        "/sequence-files/IGVFFI2632XBRJ/",
87        "/sequence-files/IGVFFI8240DRXS/",
88        "/sequence-files/IGVFFI0065MKGN/",
89        "/sequence-files/IGVFFI3881RDWH/"
90    ],
91    "status": "released",
92    "submitted_by": {
93        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
94        "title": "Christopher Mcginnis"
95    },
96    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp16_atac_10x3_NGS4_atac_seqspec.yaml.gz",
97    "summary": "seqspec of IGVFFI2632XBRJ, IGVFFI8240DRXS, IGVFFI0065MKGN, IGVFFI3881RDWH",
98    "upload_status": "validated",
99    "uuid": "47bde3d1-e776-4f61-9a61-9a09f9b84b35",
100    "validate_onlist_files": true
101}