IGVFFI8401ABRQ

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI8401ABRQ/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI8401ABRQ",
10    "aliases": [
11        "buenrostro-bernstein:IGVFFI6167AJYF_seqspec"
12    ],
13    "assay_titles": [
14        "SHARE-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011986/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v20",
22    "content_md5sum": "7e5302e394d6e38fc31c66f5eeef2fd4",
23    "content_type": "seqspec",
24    "creation_timestamp": "2025-03-18T17:53:46.636385+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS9059ORGF/",
28        "@type": [
29            "MeasurementSet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS9059ORGF",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0002764/",
36            "term_name": "single-cell ATAC-seq"
37        },
38        "file_set_type": "experimental data",
39        "samples": [
40            {
41                "@id": "/in-vitro-systems/IGVFSM4239FRER/",
42                "@type": [
43                    "InVitroSystem",
44                    "Biosample",
45                    "Sample",
46                    "Item"
47                ],
48                "accession": "IGVFSM4239FRER",
49                "classifications": [
50                    "organoid"
51                ],
52                "sample_terms": [
53                    {
54                        "@id": "/sample-terms/UBERON_0000397/",
55                        "status": "released",
56                        "term_name": "colonic epithelium"
57                    }
58                ],
59                "status": "released",
60                "summary": "Mus musculus C57BL/6J colonic epithelium organoid induced to colon for 27 days",
61                "targeted_sample_term": {
62                    "@id": "/sample-terms/UBERON_0001155/",
63                    "status": "released",
64                    "term_name": "colon"
65                },
66                "taxa": "Mus musculus"
67            }
68        ],
69        "status": "released",
70        "summary": "single-cell ATAC-seq (SHARE-seq)"
71    },
72    "file_size": 1212,
73    "gene_list_for": [],
74    "href": "/configuration-files/IGVFFI8401ABRQ/@@download/IGVFFI8401ABRQ.yaml.gz",
75    "input_file_for": [],
76    "integrated_in": [],
77    "lab": {
78        "@id": "/labs/jason-buenrostro/",
79        "title": "Jason Buenrostro, Broad"
80    },
81    "loci_list_for": [],
82    "md5sum": "5252f7e9f88dd7cd0a3a89741c369374",
83    "quality_metrics": [],
84    "release_timestamp": "2025-03-26T17:33:52.585447+00:00",
85    "s3_uri": "s3://igvf-files/2025/03/18/4a54f561-f810-4910-8f1b-27a7d6ac7ac7/IGVFFI8401ABRQ.yaml.gz",
86    "schema_version": "7",
87    "seqspec_of": [
88        "/sequence-files/IGVFFI8793QBEK/",
89        "/sequence-files/IGVFFI6167AJYF/",
90        "/sequence-files/IGVFFI2751XKQB/"
91    ],
92    "status": "released",
93    "submitted_by": {
94        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
95        "title": "Siddarth Wekhande"
96    },
97    "submitted_file_name": "gs://sw-igvf-submission/surya-mouse-colitis/seqspecs/IGVFFI6167AJYF_seqspec.yaml.gz",
98    "summary": "seqspec of IGVFFI8793QBEK, IGVFFI6167AJYF, IGVFFI2751XKQB",
99    "upload_status": "validated",
100    "uuid": "4a54f561-f810-4910-8f1b-27a7d6ac7ac7",
101    "validate_onlist_files": true
102}