{
"@context": "/terms/",
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"File",
"Item"
],
"accession": "IGVFFI8279LNQJ",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp3_multi_10x1_NGS2"
],
"assay_titles": [
"10x multiome with MULTI-seq"
],
"audit": {},
"award": {
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"component": "mapping"
},
"checkfiles_version": "v16",
"content_md5sum": "31e8defd74c788454a37e806c04c71b1",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T02:36:32.815249+00:00",
"file_format": "yaml",
"file_set": {
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"accession": "IGVFDS8334UDJX",
"file_set_type": "lipid-conjugated oligo sequencing",
"samples": [
{
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"accession": "IGVFSM4259POAT",
"classifications": [
"cell line",
"differentiated cell specimen",
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
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"status": "released",
"term_name": "HepG2"
},
{
"@id": "/sample-terms/EFO_0003045/",
"status": "released",
"term_name": "H9"
},
{
"@id": "/sample-terms/EFO_0009747/",
"status": "released",
"term_name": "GM25256 (WTC-11)"
}
],
"status": "released",
"summary": "multiplexed sample: H9 differentiated cell specimen induced to cardiac muscle cell for 15 days, female, Homo sapiens; HepG2 cell line, male, Homo sapiens grown in DMEM without serum; ... and 10 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
"file_size": 1333,
"gene_list_for": [],
"href": "/configuration-files/IGVFFI8279LNQJ/@@download/IGVFFI8279LNQJ.yaml.gz",
"input_file_for": [],
"integrated_in": [],
"lab": {
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"title": "Ansuman Satpathy, Stanford"
},
"loci_list_for": [],
"md5sum": "f72b9ab0f8701c21209baf1363961ecf",
"quality_metrics": [],
"release_timestamp": "2025-03-07T01:10:49.402032+00:00",
"s3_uri": "s3://igvf-files/2024/09/18/0b25b8a9-15a4-4616-9f73-f6ee1bf41e4a/IGVFFI8279LNQJ.yaml.gz",
"schema_version": "7",
"seqspec_of": [
"/sequence-files/IGVFFI9591MUAU/",
"/sequence-files/IGVFFI4180FPOS/",
"/sequence-files/IGVFFI7146RSLN/",
"/sequence-files/IGVFFI1884MSZS/"
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp3_multi_10x1_NGS2_multi_seqspec.yaml.gz",
"summary": "seqspec of IGVFFI9591MUAU, IGVFFI4180FPOS, IGVFFI7146RSLN, IGVFFI1884MSZS",
"upload_status": "validated",
"uuid": "0b25b8a9-15a4-4616-9f73-f6ee1bf41e4a",
"validate_onlist_files": false
}