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INDEXED
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ConfigurationFile
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IGVFFI8172QTCF
IGVFFI8172QTCF
released
validated
Json view
File Set
IGVFDS7161RJGI
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI2909OQKE, IGVFFI3893DRJR, IGVFFI5167GKMK, IGVFFI1502ATIW
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp12_atac_10x6_NGS7
md5sum
e2469105a1856fd4702d339a0b7f01de
Content MD5sum
ffbb0841df1d2cb91f9d6d937bf8c8f9
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_atac_10x6_NGS7_atac_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1502ATIW
fastq
reads
1
Read 1
Illumina NovaSeq X
225JCCLT3
7
6.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI2909OQKE
fastq
reads
1
Illumina NovaSeq X
225JCCLT3
7
1.4 GB
Ansuman Satpathy, Stanford
validated
IGVFFI3893DRJR
fastq
reads
1
Read 2
Illumina NovaSeq X
225JCCLT3
7
6.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI5167GKMK
fastq
reads
1
Barcode index
Illumina NovaSeq X
225JCCLT3
7
3.3 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM5574TAPU
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford