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IGVFFI8106AJBG

released
validated
File Set
IGVFDS5533XJRU(gRNA sequencing for mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci)
Summary
seqspec of IGVFFI2914SEZO, IGVFFI0675WIPQ, IGVFFI1192NXTI
File Format
yaml
Content Type
seqspec
Aliases
jesse-engreitz:seqspecfile_crispr_CRUDO_TAPseq_Auxin6hrs-Rep1-S2
md5sum
236fdd9e55a5ef05ac45321f604184a3
Content MD5sum
cd8f6232860a87430081ee05b4f785cd
File Size
1.2 KB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/tapseq_seqspec.out.Auxin6hrs-Rep1-S2.crispr.yaml.gz

seqspec File Of

3 items
fastq
reads
1
2
72 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
2
405 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
2
220 MB
Jesse Engreitz, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens treated with 1 μM 5-Phenyl-1H-indole-3-acetic acid for 6 hours, modified with AID system targeting RAD21, CRISPRi Sp-dCas9-KOX1-KRAB, transfected with a guide library

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford