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INDEXED
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ConfigurationFile
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IGVFFI8051LVYH
IGVFFI8051LVYH
released
validated
Json view
File Set
IGVFDS6282JZAK
(single-nucleus ATAC-seq (10x multiome))
Summary
seqspec of IGVFFI6145ZBTE, IGVFFI7332NZJQ, IGVFFI4860ZCFN, IGVFFI2836HZXX
File Format
yaml
Content Type
seqspec
Aliases
chongyuan-luo:ys3c_snATAC_L3_seqspec
md5sum
b9ea2da4c6e62fff40409bd8b66f3b34
Content MD5sum
6c65107cc13f337870e1f58b0cb9895d
File Size
1.3 KB
Submitted File Name
/home/ec2-user/igvf/submit/yaml/year2/multiome/atac/ys3c.L3.yaml.gz
Checkfiles Version
v20
Attribution
Kathrin Plath, UCLA
(
HG012079
—
Chongyuan Luo
)
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI2836HZXX
fastq
reads
1
Read 2
Illumina NovaSeq 6000
3
14 GB
Kathrin Plath, UCLA
validated
IGVFFI4860ZCFN
fastq
reads
1
Barcode index
Illumina NovaSeq 6000
3
4.4 GB
Kathrin Plath, UCLA
validated
IGVFFI6145ZBTE
fastq
reads
1
Read 1
Illumina NovaSeq 6000
3
1.8 GB
Kathrin Plath, UCLA
validated
IGVFFI7332NZJQ
fastq
reads
1
Read 1
Illumina NovaSeq 6000
3
14 GB
Kathrin Plath, UCLA
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM1173KPTS
MultiplexedSample
fibroblast
multiplexed sample: Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 1 day; Homo sapiens fibroblast reprogrammed cell specimen induced to induced pluripotent stem cell for 5 days; ... and 2 more samples