Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Data Model
About
Help
Sign In
INDEXED
Home
/
ConfigurationFile
/
IGVFFI8015EHXD
IGVFFI8015EHXD
released
validated
Json view
File Set
IGVFDS9674AATW
(CRISPR interference Perturb-seq integrating a guide (sgRNA) library targeting transcription start sites in 24 genes)
Summary
seqspec of IGVFFI6382YKWB, IGVFFI0961HLAP
File Format
yaml
Content Type
seqspec
Aliases
charles-gersbach:cd8-tcells-perturb-seq-crispri-gex-rep3-rep3-fastq-lane4_seqspec
md5sum
f5e72575746370585e5e66cc05058a5d
Content MD5sum
f1b15560cd57d868311173549bf5d1d9
File Size
982 B
Submitted File Name
/datacommons/gersbachlab/Ruhi/IGVFseqspec/CRISPRiD3_S3nS9_L004.rna.yaml.gz
seqspec File Of
2 items
Accession
File Format
Content Type
Sequencing Run
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0961HLAP
fastq
reads
3
Illumina NovaSeq 6000
4
14 GB
Charles Gersbach, Duke
validated
IGVFFI6382YKWB
fastq
reads
3
Illumina NovaSeq 6000
4
5.7 GB
Charles Gersbach, Duke
validated
Samples
1 item
Accession
Type
Sample Terms
Summary
IGVFSM5189UBOI
PrimaryCell
CD8-positive, alpha-beta memory T cell
CD8-positive, alpha-beta memory T cell, Homo sapiens modified with CRISPRi Sa-dCas9, transduced (lentivirus) with a guide library (MOI of 0.4)
Attribution
Award
HG012053
Principal Investigator(s)
Charles Gersbach
,
Gregory Crawford
,
Tim Reddy
Contact P.I.
Charles Gersbach
Lab
Charles Gersbach, Duke