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INDEXED
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ConfigurationFile
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IGVFFI7918TTRU
IGVFFI7918TTRU
released
validated
Json view
File Set
IGVFDS5452GNYG
(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI4512PDWA, IGVFFI9302ZMEC, IGVFFI1514EJBS, IGVFFI8307CRFZ
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp17_rna_10x5_NGS1
md5sum
5f88ac7ed58a91f3d837ec367e326fee
Content MD5sum
8687215b5e649145116ea49ec7c6bb6c
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp17_rna_10x5_NGS1_rna_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1514EJBS
fastq
reads
1
Illumina NovaSeq X
22NCYLLT3
5
1.5 GB
Ansuman Satpathy, Stanford
validated
IGVFFI4512PDWA
fastq
reads
1
Read 1
Illumina NovaSeq X
22NCYLLT3
5
6.0 GB
Ansuman Satpathy, Stanford
validated
IGVFFI8307CRFZ
fastq
reads
1
Illumina NovaSeq X
22NCYLLT3
5
1.8 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9302ZMEC
fastq
reads
1
Read 2
Illumina NovaSeq X
22NCYLLT3
5
12 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM8270UYGU
MultiplexedSample
RUES2
multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Ansuman Satpathy, Stanford