{
"@context": "/terms/",
"@id": "/configuration-files/IGVFFI7913SBBR/",
"@type": [
"ConfigurationFile",
"File",
"Item"
],
"accession": "IGVFFI7913SBBR",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp6_multi_10x2_NGS3"
],
"assay_titles": [
"10x multiome with MULTI-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG012076/",
"component": "mapping"
},
"checkfiles_version": "v16",
"content_md5sum": "51cb0bc0a94faa46d682615362b2065c",
"content_type": "seqspec",
"creation_timestamp": "2024-09-18T02:42:34.439112+00:00",
"file_format": "yaml",
"file_set": {
"@id": "/auxiliary-sets/IGVFDS7320EONJ/",
"accession": "IGVFDS7320EONJ",
"file_set_type": "lipid-conjugated oligo sequencing",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM8961ZZQN/",
"accession": "IGVFSM8961ZZQN",
"classifications": [
"cell line",
"differentiated cell specimen",
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0003042/",
"status": "released",
"term_name": "H1-hESC"
}
],
"status": "released",
"summary": "multiplexed sample: H1-hESC differentiated cell specimen induced to islet of Langerhans for 18 days, male, Homo sapiens; H1-hESC differentiated cell specimen induced to islet of Langerhans for 7 days, male, Homo sapiens; ... and 6 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"status": "released",
"summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
"file_size": 1334,
"gene_list_for": [],
"href": "/configuration-files/IGVFFI7913SBBR/@@download/IGVFFI7913SBBR.yaml.gz",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"loci_list_for": [],
"md5sum": "c5a4dd8ddbe63070058d6c68cb7e20e1",
"quality_metrics": [],
"release_timestamp": "2025-03-07T01:12:44.107628+00:00",
"s3_uri": "s3://igvf-files/2024/09/18/e3657e7c-dd31-4cbd-81a7-c4e83d77d2fc/IGVFFI7913SBBR.yaml.gz",
"schema_version": "7",
"seqspec_of": [
"/sequence-files/IGVFFI6073CHBH/",
"/sequence-files/IGVFFI2222XICV/",
"/sequence-files/IGVFFI2582FWAA/",
"/sequence-files/IGVFFI4802ZDMW/"
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp6_multi_10x2_NGS3_multi_seqspec.yaml.gz",
"summary": "seqspec of IGVFFI6073CHBH, IGVFFI2222XICV, IGVFFI2582FWAA, IGVFFI4802ZDMW",
"upload_status": "validated",
"uuid": "e3657e7c-dd31-4cbd-81a7-c4e83d77d2fc",
"validate_onlist_files": false
}