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INDEXED
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ConfigurationFile
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IGVFFI7872SZNH
IGVFFI7872SZNH
released
validated
Json view
File Set
IGVFDS0668NWBP
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI0728JFDP, IGVFFI2145WVPR, IGVFFI1758BQPR, IGVFFI7529KQXH
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp11_atac_10x2_NGS4
md5sum
7dc75ac6b8cc53c72eda83bea240b06e
Content MD5sum
f741f7d2dec5e603e701fd25c271d0c1
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp11_atac_10x2_NGS4_atac_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0728JFDP
fastq
reads
1
Barcode index
Illumina NovaSeq X
2257FHLT3
8
5.6 GB
Ansuman Satpathy, Stanford
validated
IGVFFI1758BQPR
fastq
reads
1
Read 1
Illumina NovaSeq X
2257FHLT3
8
10 GB
Ansuman Satpathy, Stanford
validated
IGVFFI2145WVPR
fastq
reads
1
Read 2
Illumina NovaSeq X
2257FHLT3
8
10 GB
Ansuman Satpathy, Stanford
validated
IGVFFI7529KQXH
fastq
reads
1
Illumina NovaSeq X
2257FHLT3
8
2.2 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM9487HFQW
MultiplexedSample
GM25256 (WTC-11)
,
H7-hESC
multiplexed sample: H7-hESC differentiated cell specimen, female, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford