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INDEXED
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ConfigurationFile
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IGVFFI7823EBGU
IGVFFI7823EBGU
released
validated
Json view
File Set
IGVFDS1570UJMU
(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI1948ZHFI, IGVFFI7047MHFI, IGVFFI3303ZBHR, IGVFFI3214RTBN
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp12_rna_10x1_NGS5
md5sum
12468b881f31ed18adae8296f93ae462
Content MD5sum
148eb7499b1dfc77f824e7bc25ce6bd4
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_rna_10x1_NGS5_rna_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1948ZHFI
fastq
reads
1
Read 2
Illumina NovaSeq X
225LWLLT3
5
8.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI3214RTBN
fastq
reads
1
Illumina NovaSeq X
225LWLLT3
5
1.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI3303ZBHR
fastq
reads
1
Illumina NovaSeq X
225LWLLT3
5
1.0 GB
Ansuman Satpathy, Stanford
validated
IGVFFI7047MHFI
fastq
reads
1
Read 1
Illumina NovaSeq X
225LWLLT3
5
3.7 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM3641EGVH
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford