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INDEXED
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ConfigurationFile
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IGVFFI7497UYKO
IGVFFI7497UYKO
released
validated
Json view
File Set
IGVFDS4340TUUZ
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI1872OAKD, IGVFFI1806XLTF, IGVFFI3461DLIM, IGVFFI9445PPMH
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp6_atac_10x4_NGS1
md5sum
14ba2a051f0b3afd7a38dfc490f78700
Content MD5sum
5f9b68c80df2235ce2005b0d3e6eead2
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp6_atac_10x4_NGS1_atac_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI1806XLTF
fastq
reads
1
Barcode index
Illumina NovaSeq X
223JH2LT3
5
4.0 GB
Ansuman Satpathy, Stanford
validated
IGVFFI1872OAKD
fastq
reads
1
Read 1
Illumina NovaSeq X
223JH2LT3
5
7.4 GB
Ansuman Satpathy, Stanford
validated
IGVFFI3461DLIM
fastq
reads
1
Read 2
Illumina NovaSeq X
223JH2LT3
5
7.4 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9445PPMH
fastq
reads
1
Illumina NovaSeq X
223JH2LT3
5
1.6 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM2522EBPE
MultiplexedSample
H1-hESC
multiplexed sample: H1-hESC differentiated cell specimen induced to islet of Langerhans for 18 days, male, Homo sapiens; H1-hESC differentiated cell specimen induced to islet of Langerhans for 7 days, male, Homo sapiens; ... and 6 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford