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INDEXED
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ConfigurationFile
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IGVFFI7298UQDX
IGVFFI7298UQDX
released
validated
Json view
File Set
IGVFDS0504BMLR
(lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI5907GJAD, IGVFFI6128MIKW, IGVFFI0550YVRY, IGVFFI1376MSHH
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp17_multi_10x1_NGS2
md5sum
1175644b4f682c034719b613509c0bd1
Content MD5sum
021b8080fb8979eef7e0085513480f96
File Size
1.3 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp17_multi_10x1_NGS2_multi_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0550YVRY
fastq
reads
1
Illumina NovaSeq X
22NCYLLT3
6
85 MB
Ansuman Satpathy, Stanford
validated
IGVFFI1376MSHH
fastq
reads
1
Illumina NovaSeq X
22NCYLLT3
6
61 MB
Ansuman Satpathy, Stanford
validated
IGVFFI5907GJAD
fastq
reads
1
Illumina NovaSeq X
22NCYLLT3
6
209 MB
Ansuman Satpathy, Stanford
validated
IGVFFI6128MIKW
fastq
reads
1
Illumina NovaSeq X
22NCYLLT3
6
475 MB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM7909ETQJ
MultiplexedSample
RUES2
multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Ansuman Satpathy, Stanford