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INDEXED
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ConfigurationFile
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IGVFFI7227GSTQ
IGVFFI7227GSTQ
released
validated
Json view
File Set
IGVFDS8318UIEY
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI1080FTIX, IGVFFI0284XTZX, IGVFFI8082LALD, IGVFFI9995XRMI
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp11_atac_10x1_NGS4
md5sum
d2ca8b8e89975fc73394b9afe4cb7538
Content MD5sum
a4ef388a5d84e3efd889c0e592655b8c
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp11_atac_10x1_NGS4_atac_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0284XTZX
fastq
reads
1
Illumina NovaSeq X
2257FHLT3
8
1.6 GB
Ansuman Satpathy, Stanford
validated
IGVFFI1080FTIX
fastq
reads
1
Barcode index
Illumina NovaSeq X
2257FHLT3
8
3.8 GB
Ansuman Satpathy, Stanford
validated
IGVFFI8082LALD
fastq
reads
1
Read 1
Illumina NovaSeq X
2257FHLT3
8
7.0 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9995XRMI
fastq
reads
1
Read 2
Illumina NovaSeq X
2257FHLT3
8
6.9 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM9367PJMT
MultiplexedSample
GM25256 (WTC-11)
,
H7-hESC
multiplexed sample: H7-hESC differentiated cell specimen, female, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days, male, Homo sapiens; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford