{
"@context": "/terms/",
"@id": "/configuration-files/IGVFFI7052UZXB/",
"@type": [
"ConfigurationFile",
"File",
"Item"
],
"accession": "IGVFFI7052UZXB",
"aliases": [
"ansuman-satpathy:seqspec_igvf_exp17_atac_10x3_NGS2"
],
"assay_titles": [
"10x multiome with MULTI-seq"
],
"audit": {},
"award": {
"@id": "/awards/HG011972/",
"component": "functional characterization"
},
"checkfiles_version": "v16",
"content_md5sum": "c5db5d22a2125be4bdc7bfa19835e789",
"content_type": "seqspec",
"creation_timestamp": "2025-02-26T01:43:02.055129+00:00",
"file_format": "yaml",
"file_set": {
"@id": "/measurement-sets/IGVFDS1850HDEG/",
"accession": "IGVFDS1850HDEG",
"file_set_type": "experimental data",
"samples": [
{
"@id": "/multiplexed-samples/IGVFSM6345RLEH/",
"accession": "IGVFSM6345RLEH",
"classifications": [
"differentiated cell specimen",
"multiplexed sample"
],
"disease_terms": [],
"modifications": [],
"sample_terms": [
{
"@id": "/sample-terms/EFO_0009320/",
"status": "released",
"term_name": "RUES2"
}
],
"status": "released",
"summary": "multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples",
"taxa": "Homo sapiens",
"treatments": []
}
],
"status": "released",
"summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
},
"file_size": 1379,
"gene_list_for": [],
"href": "/configuration-files/IGVFFI7052UZXB/@@download/IGVFFI7052UZXB.yaml.gz",
"input_file_for": [],
"integrated_in": [],
"lab": {
"@id": "/labs/ansuman-satpathy/",
"title": "Ansuman Satpathy, Stanford"
},
"loci_list_for": [],
"md5sum": "d0060a762ccdfc81287d81f80999a729",
"quality_metrics": [],
"release_timestamp": "2025-03-07T01:16:53.632677+00:00",
"s3_uri": "s3://igvf-files/2025/02/26/18d3739a-ff4c-454a-9111-378ed6fb1987/IGVFFI7052UZXB.yaml.gz",
"schema_version": "7",
"seqspec_of": [
"/sequence-files/IGVFFI7682FQQC/",
"/sequence-files/IGVFFI4704BEZU/",
"/sequence-files/IGVFFI5130TSUS/",
"/sequence-files/IGVFFI3290KMXW/"
],
"status": "released",
"submitted_by": {
"@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
"title": "Christopher Mcginnis"
},
"submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp17_atac_10x3_NGS2_atac_seqspec.yaml.gz",
"summary": "seqspec of IGVFFI7682FQQC, IGVFFI4704BEZU, IGVFFI5130TSUS, IGVFFI3290KMXW",
"upload_status": "validated",
"uuid": "18d3739a-ff4c-454a-9111-378ed6fb1987",
"validate_onlist_files": true
}