IGVFFI7042PWMU

{
    "@context": "/terms/",
    "@id": "/configuration-files/IGVFFI7042PWMU/",
    "@type": [
        "ConfigurationFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI7042PWMU",
    "aliases": [
        "ansuman-satpathy:seqspec_igvf_exp17_atac_10x3_NGS1"
    ],
    "assay_titles": [
        "10x multiome with MULTI-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG011972/",
        "component": "functional characterization"
    },
    "checkfiles_version": "v16",
    "content_md5sum": "d01a48b1401cf7db4fd5f7d2c1d15098",
    "content_type": "seqspec",
    "creation_timestamp": "2025-02-26T01:42:57.697651+00:00",
    "file_format": "yaml",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS1850HDEG/",
        "accession": "IGVFDS1850HDEG",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM6345RLEH/",
                "accession": "IGVFSM6345RLEH",
                "classifications": [
                    "differentiated cell specimen",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0009320/",
                        "status": "released",
                        "term_name": "RUES2"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
    },
    "file_size": 1378,
    "gene_list_for": [],
    "href": "/configuration-files/IGVFFI7042PWMU/@@download/IGVFFI7042PWMU.yaml.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "loci_list_for": [],
    "md5sum": "3ddc5197035c8038c00b053013d18e7d",
    "quality_metrics": [],
    "release_timestamp": "2025-03-07T01:16:53.821266+00:00",
    "s3_uri": "s3://igvf-files/2025/02/26/6ab9e388-e4d8-4f44-8ca5-ef8c7169945f/IGVFFI7042PWMU.yaml.gz",
    "schema_version": "7",
    "seqspec_of": [
        "/sequence-files/IGVFFI3965NAFA/",
        "/sequence-files/IGVFFI7047SZBO/",
        "/sequence-files/IGVFFI0767RWRM/",
        "/sequence-files/IGVFFI3832ITNZ/"
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp17_atac_10x3_NGS1_atac_seqspec.yaml.gz",
    "summary": "seqspec of IGVFFI3965NAFA, IGVFFI7047SZBO, IGVFFI0767RWRM, IGVFFI3832ITNZ",
    "upload_status": "validated",
    "uuid": "6ab9e388-e4d8-4f44-8ca5-ef8c7169945f",
    "validate_onlist_files": true
}