IGVFFI6815MXFM

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI6815MXFM/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI6815MXFM",
10    "aliases": [
11        "ansuman-satpathy:seqspec_igvf_exp11_multi_10x3_NGS1"
12    ],
13    "assay_titles": [
14        "10x multiome with MULTI-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v16",
22    "content_md5sum": "44e5fcdbcbf0b3c36a9e5775a231bc2a",
23    "content_type": "seqspec",
24    "creation_timestamp": "2024-09-18T02:23:32.061850+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/auxiliary-sets/IGVFDS2891PUQE/",
28        "@type": [
29            "AuxiliarySet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS2891PUQE",
34        "file_set_type": "lipid-conjugated oligo sequencing",
35        "samples": [
36            {
37                "@id": "/multiplexed-samples/IGVFSM6160ZDRZ/",
38                "@type": [
39                    "MultiplexedSample",
40                    "Sample",
41                    "Item"
42                ],
43                "accession": "IGVFSM6160ZDRZ",
44                "classifications": [
45                    "differentiated cell specimen",
46                    "multiplexed sample"
47                ],
48                "disease_terms": [],
49                "modifications": [],
50                "sample_terms": [
51                    {
52                        "@id": "/sample-terms/EFO_0005904/",
53                        "status": "released",
54                        "term_name": "H7-hESC"
55                    },
56                    {
57                        "@id": "/sample-terms/EFO_0009747/",
58                        "status": "released",
59                        "term_name": "GM25256 (WTC-11)"
60                    }
61                ],
62                "status": "released",
63                "summary": "multiplexed sample: Homo sapiens (female) H7-hESC differentiated cell specimen; Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 6 days; ... and 10 more samples",
64                "taxa": "Homo sapiens",
65                "treatments": []
66            }
67        ],
68        "status": "released",
69        "summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
70    },
71    "file_size": 1332,
72    "gene_list_for": [],
73    "href": "/configuration-files/IGVFFI6815MXFM/@@download/IGVFFI6815MXFM.yaml.gz",
74    "input_file_for": [],
75    "integrated_in": [],
76    "lab": {
77        "@id": "/labs/ansuman-satpathy/",
78        "title": "Ansuman Satpathy, Stanford"
79    },
80    "loci_list_for": [],
81    "md5sum": "bf1c0eaad5f9fc6416795617795787e8",
82    "quality_metrics": [],
83    "release_timestamp": "2025-03-07T01:14:16.455366+00:00",
84    "s3_uri": "s3://igvf-files/2024/09/18/bfe9eeb9-7c86-42f6-9c5d-e97a1246ec57/IGVFFI6815MXFM.yaml.gz",
85    "schema_version": "7",
86    "seqspec_of": [
87        "/sequence-files/IGVFFI1459EWYM/",
88        "/sequence-files/IGVFFI1863KESP/",
89        "/sequence-files/IGVFFI8218BXBQ/",
90        "/sequence-files/IGVFFI6512VPPO/"
91    ],
92    "status": "released",
93    "submitted_by": {
94        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
95        "title": "Christopher Mcginnis"
96    },
97    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp11_multi_10x3_NGS1_multi_seqspec.yaml.gz",
98    "summary": "seqspec of IGVFFI1459EWYM, IGVFFI1863KESP, IGVFFI8218BXBQ, IGVFFI6512VPPO",
99    "upload_status": "validated",
100    "uuid": "bfe9eeb9-7c86-42f6-9c5d-e97a1246ec57",
101    "validate_onlist_files": false
102}