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IGVFFI6799PEMC

released
validated
File Set
IGVFDS5177YHMM(single-cell RNA sequencing assay (SHARE-seq))
Summary
seqspec of IGVFFI8547WDDR, IGVFFI4067FRSX
File Format
yaml
Content Type
seqspec
Aliases
buenrostro-bernstein:SS-LS_3832_seqspec
md5sum
902b1de410d323f49b079d1f9c405c5a
Content MD5sum
5e13a14f166024ae1d2b8b6f98e79f0b
File Size
1.3 KB
Submitted File Name
gs://sw-igvf-submission/seqspec-v3/pilot-mouse-brain-new-pkr/SS-LS_3832_seqspec.yaml.gz
Checkfiles Version
v20
Attribution
Jason Buenrostro, Broad

seqspec File Of

2 items
Read Names
fastq
reads
3832
Read 2, Barcode index
H22KKDRX5
1.2 GB
Jason Buenrostro, Broad
validated
fastq
reads
3832
Read 1
H22KKDRX5
738 MB
Jason Buenrostro, Broad
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 brain tissue (cellular sub pool: SS-PKR 436)

Files Derived From This File

2 items
tar
kallisto single cell RNAseq output
unfiltered cell by gene in kallisto single cell RNAseq output
Jason Buenrostro, Broad
6.8 GB
validated
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
1.2 GB
validated