IGVFFI6773MIEP

{
    "@context": "/terms/",
    "@id": "/configuration-files/IGVFFI6773MIEP/",
    "@type": [
        "ConfigurationFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI6773MIEP",
    "aliases": [
        "ansuman-satpathy:seqspec_igvf_exp5_atac_10x3_NGS3"
    ],
    "assay_titles": [
        "10x multiome with MULTI-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012076/",
        "component": "mapping"
    },
    "checkfiles_version": "v16",
    "content_md5sum": "55cfbacd43395fb8313b6c6304c33af6",
    "content_type": "seqspec",
    "creation_timestamp": "2024-09-18T02:39:09.244546+00:00",
    "file_format": "yaml",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS1261CJEE/",
        "accession": "IGVFDS1261CJEE",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM7875RUGJ/",
                "accession": "IGVFSM7875RUGJ",
                "classifications": [
                    "cell line",
                    "differentiated cell specimen",
                    "gastruloid",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0001184/",
                        "status": "released",
                        "term_name": "HEK293T"
                    },
                    {
                        "@id": "/sample-terms/EFO_0003042/",
                        "status": "released",
                        "term_name": "H1-hESC"
                    },
                    {
                        "@id": "/sample-terms/EFO_0003045/",
                        "status": "released",
                        "term_name": "H9"
                    },
                    {
                        "@id": "/sample-terms/EFO_0009747/",
                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; H9 differentiated cell specimen induced to neuron for 6 days, female, Homo sapiens; ... and 6 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
    },
    "file_size": 1374,
    "gene_list_for": [],
    "href": "/configuration-files/IGVFFI6773MIEP/@@download/IGVFFI6773MIEP.yaml.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "loci_list_for": [],
    "md5sum": "7560ce4ad0339ab6d0c00fdbb349e4f6",
    "quality_metrics": [],
    "release_timestamp": "2025-03-07T01:12:02.684596+00:00",
    "s3_uri": "s3://igvf-files/2024/09/18/3a5cc408-cd34-4e64-a901-7221ae9b60ca/IGVFFI6773MIEP.yaml.gz",
    "schema_version": "7",
    "seqspec_of": [
        "/sequence-files/IGVFFI6589SWNM/",
        "/sequence-files/IGVFFI2092BZUG/",
        "/sequence-files/IGVFFI8631TOVI/",
        "/sequence-files/IGVFFI6217KQHY/"
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp5_atac_10x3_NGS3_atac_seqspec.yaml.gz",
    "summary": "seqspec of IGVFFI6589SWNM, IGVFFI2092BZUG, IGVFFI8631TOVI, IGVFFI6217KQHY",
    "upload_status": "validated",
    "uuid": "3a5cc408-cd34-4e64-a901-7221ae9b60ca",
    "validate_onlist_files": true
}