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IGVFFI6754AMBN

released
validated
File Set
IGVFDS9139TBCB(interference single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI5713MCUV, IGVFFI4378SNUH, IGVFFI1923SQPQ, IGVFFI9877ARCO
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp10_rna_10x2_NGS2
md5sum
c09e9e89ba6971329e3cde2ba9b512d4
Content MD5sum
40bd903bfc322bdaf96376c1d833eb57
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp10_rna_10x2_NGS2_rna_seqspec.yaml.gz
Checkfiles Version
v16

seqspec File Of

4 items
Read Names
fastq
reads
1
223JHYLT3
5
2.4 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
1
Read 1
223JHYLT3
5
9.9 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
1
Read 2
223JHYLT3
5
22 GB
Ansuman Satpathy, Stanford
validated
fastq
reads
1
223JHYLT3
5
2.4 GB
Ansuman Satpathy, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Jurkat cell line, male, Homo sapiens treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours; K562 cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB; ... and 8 more samples

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford