IGVFFI6533YMOZ

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI6533YMOZ/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI6533YMOZ",
10    "aliases": [
11        "ansuman-satpathy:seqspec_igvf_mouse_bridge_101_atac"
12    ],
13    "assay_titles": [
14        "10x multiome"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v16",
22    "content_md5sum": "b96fed81f43caae4ab9842023f97a891",
23    "content_type": "seqspec",
24    "creation_timestamp": "2024-09-18T02:45:25.181308+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS6819TPGN/",
28        "@type": [
29            "MeasurementSet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS6819TPGN",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0002762/",
36            "term_name": "single-nucleus ATAC-seq"
37        },
38        "file_set_type": "experimental data",
39        "samples": [
40            {
41                "@id": "/tissues/IGVFSM2776DDRF/",
42                "@type": [
43                    "Tissue",
44                    "Biosample",
45                    "Sample",
46                    "Item"
47                ],
48                "accession": "IGVFSM2776DDRF",
49                "classifications": [
50                    "tissue"
51                ],
52                "sample_terms": [
53                    {
54                        "@id": "/sample-terms/NTR_0000646/",
55                        "status": "released",
56                        "term_name": "left cerebral cortex"
57                    }
58                ],
59                "status": "released",
60                "summary": "Mus musculus CAST/EiJ (male, 10 weeks) left cerebral cortex tissue",
61                "taxa": "Mus musculus"
62            }
63        ],
64        "status": "released",
65        "summary": "single-nucleus ATAC-seq (10x multiome)"
66    },
67    "file_size": 1382,
68    "gene_list_for": [],
69    "href": "/configuration-files/IGVFFI6533YMOZ/@@download/IGVFFI6533YMOZ.yaml.gz",
70    "input_file_for": [],
71    "integrated_in": [],
72    "lab": {
73        "@id": "/labs/ansuman-satpathy/",
74        "title": "Ansuman Satpathy, Stanford"
75    },
76    "loci_list_for": [],
77    "md5sum": "457d5f22266372ab56346c04bf1b2f97",
78    "quality_metrics": [],
79    "release_timestamp": "2025-03-07T01:18:30.218756+00:00",
80    "s3_uri": "s3://igvf-files/2024/09/18/1a09c39a-fedc-4082-bb23-0775ac64d6de/IGVFFI6533YMOZ.yaml.gz",
81    "schema_version": "7",
82    "seqspec_of": [
83        "/sequence-files/IGVFFI3352IPEU/",
84        "/sequence-files/IGVFFI0305RRIM/",
85        "/sequence-files/IGVFFI0814SBBP/",
86        "/sequence-files/IGVFFI8084WUEK/"
87    ],
88    "status": "released",
89    "submitted_by": {
90        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
91        "title": "Christopher Mcginnis"
92    },
93    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_mouse_bridge_101_atac_atac_seqspec.yaml.gz",
94    "summary": "seqspec of IGVFFI3352IPEU, IGVFFI0305RRIM, IGVFFI0814SBBP, IGVFFI8084WUEK",
95    "upload_status": "validated",
96    "uuid": "1a09c39a-fedc-4082-bb23-0775ac64d6de",
97    "validate_onlist_files": true
98}