IGVFFI6488WFHN

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI6488WFHN/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI6488WFHN",
10    "assay_titles": [
11        "Parse SPLiT-seq"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG012077/",
16        "component": "mapping"
17    },
18    "checkfiles_version": "v19",
19    "content_md5sum": "56dcdaa82b8aade6b1d4d7b4e601151f",
20    "content_type": "seqspec",
21    "creation_timestamp": "2025-03-13T18:25:58.977690+00:00",
22    "file_format": "yaml",
23    "file_set": {
24        "@id": "/measurement-sets/IGVFDS9176CSYH/",
25        "@type": [
26            "MeasurementSet",
27            "FileSet",
28            "Item"
29        ],
30        "accession": "IGVFDS9176CSYH",
31        "assay_term": {
32            "@id": "/assay-terms/OBI_0003109/",
33            "term_name": "single-nucleus RNA sequencing assay"
34        },
35        "file_set_type": "experimental data",
36        "samples": [
37            {
38                "@id": "/multiplexed-samples/IGVFSM4363PDKN/",
39                "@type": [
40                    "MultiplexedSample",
41                    "Sample",
42                    "Item"
43                ],
44                "accession": "IGVFSM4363PDKN",
45                "classifications": [
46                    "tissue",
47                    "multiplexed sample"
48                ],
49                "disease_terms": [],
50                "modifications": [],
51                "sample_terms": [
52                    {
53                        "@id": "/sample-terms/CL_2000001/",
54                        "status": "released",
55                        "term_name": "peripheral blood mononuclear cell"
56                    },
57                    {
58                        "@id": "/sample-terms/NTR_0000646/",
59                        "status": "released",
60                        "term_name": "left cerebral cortex"
61                    },
62                    {
63                        "@id": "/sample-terms/NTR_0000750/",
64                        "status": "released",
65                        "term_name": "left hippocampal formation"
66                    },
67                    {
68                        "@id": "/sample-terms/UBERON_0000007/",
69                        "status": "released",
70                        "term_name": "pituitary gland"
71                    },
72                    {
73                        "@id": "/sample-terms/UBERON_0000473/",
74                        "status": "released",
75                        "term_name": "testis"
76                    },
77                    {
78                        "@id": "/sample-terms/UBERON_0000948/",
79                        "status": "released",
80                        "term_name": "heart"
81                    },
82                    {
83                        "@id": "/sample-terms/UBERON_0000992/",
84                        "status": "released",
85                        "term_name": "ovary"
86                    },
87                    {
88                        "@id": "/sample-terms/UBERON_0000993/",
89                        "status": "released",
90                        "term_name": "oviduct"
91                    },
92                    {
93                        "@id": "/sample-terms/UBERON_0001301/",
94                        "status": "released",
95                        "term_name": "epididymis"
96                    },
97                    {
98                        "@id": "/sample-terms/UBERON_0001388/",
99                        "status": "released",
100                        "term_name": "gastrocnemius"
101                    },
102                    {
103                        "@id": "/sample-terms/UBERON_0001898/",
104                        "status": "released",
105                        "term_name": "hypothalamus"
106                    },
107                    {
108                        "@id": "/sample-terms/UBERON_0002107/",
109                        "status": "released",
110                        "term_name": "liver"
111                    },
112                    {
113                        "@id": "/sample-terms/UBERON_0002113/",
114                        "status": "released",
115                        "term_name": "kidney"
116                    },
117                    {
118                        "@id": "/sample-terms/UBERON_0002369/",
119                        "status": "released",
120                        "term_name": "adrenal gland"
121                    }
122                ],
123                "status": "released",
124                "summary": "multiplexed sample: Mus musculus B6(SJL)-Trem2<em1Aduci>/J (female, 65 days) hypothalamus tissue; Mus musculus B6(SJL)-Trem2<em1Aduci>/J (male, 69 days) liver tissue; ... and 94 more samples",
125                "taxa": "Mus musculus",
126                "treatments": []
127            }
128        ],
129        "status": "released",
130        "summary": "Parse SPLiT-seq"
131    },
132    "file_size": 1381,
133    "gene_list_for": [],
134    "href": "/configuration-files/IGVFFI6488WFHN/@@download/IGVFFI6488WFHN.yaml.gz",
135    "input_file_for": [],
136    "integrated_in": [],
137    "lab": {
138        "@id": "/labs/ali-mortazavi/",
139        "title": "Ali Mortazavi, UCI"
140    },
141    "loci_list_for": [],
142    "md5sum": "169e51495e7e0766a6ab80c4d93b0499",
143    "quality_metrics": [],
144    "release_timestamp": "2025-04-19T02:00:29.872161+00:00",
145    "s3_uri": "s3://igvf-files/2025/03/13/ed64fcdc-4991-4dd9-8fcc-c4c504fc67cf/IGVFFI6488WFHN.yaml.gz",
146    "schema_version": "7",
147    "seqspec_of": [
148        "/sequence-files/IGVFFI9246TDIZ/",
149        "/sequence-files/IGVFFI2085FMMU/"
150    ],
151    "status": "released",
152    "submitted_by": {
153        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
154        "title": "Diane Trout"
155    },
156    "summary": "seqspec of IGVFFI9246TDIZ, IGVFFI2085FMMU",
157    "upload_status": "validated",
158    "uuid": "ed64fcdc-4991-4dd9-8fcc-c4c504fc67cf",
159    "validate_onlist_files": true
160}