IGVFFI6318YYQN

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI6318YYQN/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
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9    "accession": "IGVFFI6318YYQN",
10    "aliases": [
11        "jay-shendure:seqspec_of_set_CRISPRa_singlevalidations_K562_ASIC1_rep2"
12    ],
13    "assay_titles": [
14        "RNA-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011966/",
19        "component": "functional characterization"
20    },
21    "checkfiles_version": "v20",
22    "content_md5sum": "c893faae008484a18af26a4fa20a98ed",
23    "content_type": "seqspec",
24    "creation_timestamp": "2025-04-08T21:11:33.574597+00:00",
25    "derived_manually": false,
26    "file_format": "yaml",
27    "file_set": {
28        "@id": "/measurement-sets/IGVFDS6639ECQN/",
29        "@type": [
30            "MeasurementSet",
31            "FileSet",
32            "Item"
33        ],
34        "accession": "IGVFDS6639ECQN",
35        "assay_term": {
36            "@id": "/assay-terms/OBI_0003090/",
37            "term_name": "bulk RNA-seq assay"
38        },
39        "controlled_access": false,
40        "data_use_limitation_summaries": [
41            "No limitations"
42        ],
43        "file_set_type": "experimental data",
44        "samples": [
45            {
46                "@id": "/in-vitro-systems/IGVFSM4685GWVU/",
47                "@type": [
48                    "InVitroSystem",
49                    "Biosample",
50                    "Sample",
51                    "Item"
52                ],
53                "accession": "IGVFSM4685GWVU",
54                "classifications": [
55                    "cell line"
56                ],
57                "modifications": [
58                    {
59                        "@id": "/crispr-modifications/ee99bf66-2a5a-4ec6-8380-9434b259afd1/",
60                        "modality": "activation",
61                        "status": "released",
62                        "summary": "CRISPRa Sp-dCas9-VP64"
63                    }
64                ],
65                "sample_terms": [
66                    {
67                        "@id": "/sample-terms/EFO_0002067/",
68                        "status": "released",
69                        "term_name": "K562"
70                    }
71                ],
72                "status": "released",
73                "summary": "Homo sapiens (female) K562 cell line modified with CRISPRa Sp-dCas9-VP64, transfected with a guide library",
74                "taxa": "Homo sapiens"
75            }
76        ],
77        "status": "released",
78        "summary": "CRISPR activation RNA-seq integrating a guide (sgRNA) library targeting TF binding sites, candidate cis-regulatory elements in many genomic loci"
79    },
80    "file_size": 1018,
81    "gene_list_for": [],
82    "href": "/configuration-files/IGVFFI6318YYQN/@@download/IGVFFI6318YYQN.yaml.gz",
83    "input_file_for": [],
84    "integrated_in": [],
85    "lab": {
86        "@id": "/labs/jay-shendure/",
87        "title": "Jay Shendure, UW"
88    },
89    "loci_list_for": [],
90    "md5sum": "ade85edeeb004f290b4febec4fd39d06",
91    "quality_metrics": [],
92    "release_timestamp": "2025-05-27T18:53:48.510570+00:00",
93    "s3_uri": "s3://igvf-files/2025/04/08/6c6ffdb7-99d7-4cae-a1e8-28acd13d6f7e/IGVFFI6318YYQN.yaml.gz",
94    "schema_version": "8",
95    "seqspec_of": [
96        "/sequence-files/IGVFFI7174NOZD/"
97    ],
98    "status": "released",
99    "submitted_by": {
100        "@id": "/users/73f58e9f-8f5d-4fee-a7cd-dd63c0167e4b/",
101        "title": "Beth Martin"
102    },
103    "submitted_file_name": "/net/shendure/vol1/home/martin91/IGVF/forupload/seqspecs/CRISPRa-singleton-validations/CRISPRa_singleton_IGVFDS6639ECQN_seqspec_v3.yaml.gz",
104    "summary": "seqspec of IGVFFI7174NOZD",
105    "upload_status": "validated",
106    "uuid": "6c6ffdb7-99d7-4cae-a1e8-28acd13d6f7e",
107    "validate_onlist_files": false
108}