Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Resources
Data Model
About
Help
Sign In
INDEXED
Home
/
ConfigurationFile
/
IGVFFI6268SNNP
IGVFFI6268SNNP
released
validated
Json view
File Set
IGVFDS0504BMLR
(lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI5360KIKC, IGVFFI0502ZILO, IGVFFI5661CGHE, IGVFFI8119AJDV
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp17_multi_10x1_NGS1
md5sum
4705eefcbed0531fa9d1fdbd6d9ed392
Content MD5sum
8cd754efe3733a1a9fdb46cf63583f4b
File Size
1.3 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec_new/igvf_exp17_multi_10x1_NGS1_multi_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0502ZILO
fastq
reads
1
Illumina NovaSeq X
22NCYLLT3
5
469 MB
Ansuman Satpathy, Stanford
validated
IGVFFI5360KIKC
fastq
reads
1
Illumina NovaSeq X
22NCYLLT3
5
207 MB
Ansuman Satpathy, Stanford
validated
IGVFFI5661CGHE
fastq
reads
1
Illumina NovaSeq X
22NCYLLT3
5
84 MB
Ansuman Satpathy, Stanford
validated
IGVFFI8119AJDV
fastq
reads
1
Illumina NovaSeq X
22NCYLLT3
5
60 MB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM7909ETQJ
MultiplexedSample
RUES2
multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples
Attribution
Award
HG011972
Principal Investigator(s)
Anshul Kundaje
,
Jesse Engreitz
,
Marlene Rabinovitch
,
Lars Steinmetz
,
Michael Bassik
,
Thomas Quertermous
,
Will Greenleaf
Contact P.I.
Jesse Engreitz
Lab
Ansuman Satpathy, Stanford