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INDEXED
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ConfigurationFile
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IGVFFI6152BDFZ
IGVFFI6152BDFZ
released
validated
Json view
File Set
IGVFDS8103FALC
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI0863GHNX, IGVFFI6543MNBG, IGVFFI3494LPTP, IGVFFI9211ZNLQ
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp12_atac_10x1_NGS3
md5sum
9748198eccc1588cc0ad3e0169c9c330
Content MD5sum
5b60a7d9af11abcdbb8ccc7b8583c99c
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_atac_10x1_NGS3_atac_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0863GHNX
fastq
reads
1
Illumina NovaSeq X
225JTGLT3
3
909 MB
Ansuman Satpathy, Stanford
validated
IGVFFI3494LPTP
fastq
reads
1
Read 2
Illumina NovaSeq X
225JTGLT3
3
4.0 GB
Ansuman Satpathy, Stanford
validated
IGVFFI6543MNBG
fastq
reads
1
Barcode index
Illumina NovaSeq X
225JTGLT3
3
2.2 GB
Ansuman Satpathy, Stanford
validated
IGVFFI9211ZNLQ
fastq
reads
1
Read 1
Illumina NovaSeq X
225JTGLT3
3
4.0 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM3641EGVH
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford