IGVFFI6117JAFC

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI6117JAFC/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI6117JAFC",
10    "assay_titles": [
11        "Parse SPLiT-seq"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG012077/",
16        "component": "mapping"
17    },
18    "checkfiles_version": "v17",
19    "content_md5sum": "a0393a658bdfce76daad11d2cd6a216b",
20    "content_type": "seqspec",
21    "creation_timestamp": "2024-09-17T23:00:14.216258+00:00",
22    "file_format": "yaml",
23    "file_set": {
24        "@id": "/measurement-sets/IGVFDS1044PZYO/",
25        "@type": [
26            "MeasurementSet",
27            "FileSet",
28            "Item"
29        ],
30        "accession": "IGVFDS1044PZYO",
31        "assay_term": {
32            "@id": "/assay-terms/OBI_0003109/",
33            "term_name": "single-nucleus RNA sequencing assay"
34        },
35        "file_set_type": "experimental data",
36        "samples": [
37            {
38                "@id": "/multiplexed-samples/IGVFSM2299OLOC/",
39                "@type": [
40                    "MultiplexedSample",
41                    "Sample",
42                    "Item"
43                ],
44                "accession": "IGVFSM2299OLOC",
45                "classifications": [
46                    "tissue",
47                    "multiplexed sample"
48                ],
49                "disease_terms": [],
50                "modifications": [],
51                "sample_terms": [
52                    {
53                        "@id": "/sample-terms/UBERON_0000007/",
54                        "status": "released",
55                        "term_name": "pituitary gland"
56                    },
57                    {
58                        "@id": "/sample-terms/UBERON_0000473/",
59                        "status": "released",
60                        "term_name": "testis"
61                    },
62                    {
63                        "@id": "/sample-terms/UBERON_0000992/",
64                        "status": "released",
65                        "term_name": "ovary"
66                    },
67                    {
68                        "@id": "/sample-terms/UBERON_0000993/",
69                        "status": "released",
70                        "term_name": "oviduct"
71                    },
72                    {
73                        "@id": "/sample-terms/UBERON_0001301/",
74                        "status": "released",
75                        "term_name": "epididymis"
76                    },
77                    {
78                        "@id": "/sample-terms/UBERON_0001898/",
79                        "status": "released",
80                        "term_name": "hypothalamus"
81                    }
82                ],
83                "status": "released",
84                "summary": "multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 254 more samples",
85                "taxa": "Mus musculus",
86                "treatments": []
87            }
88        ],
89        "status": "released",
90        "summary": "Parse SPLiT-seq"
91    },
92    "file_size": 1350,
93    "gene_list_for": [],
94    "href": "/configuration-files/IGVFFI6117JAFC/@@download/IGVFFI6117JAFC.yaml.gz",
95    "input_file_for": [],
96    "integrated_in": [],
97    "lab": {
98        "@id": "/labs/ali-mortazavi/",
99        "title": "Ali Mortazavi, UCI"
100    },
101    "loci_list_for": [],
102    "md5sum": "62a1b34c5b48ca1490fbe549f31a2dc0",
103    "quality_metrics": [],
104    "release_timestamp": "2025-04-19T00:14:02.518210+00:00",
105    "s3_uri": "s3://igvf-files/2024/09/17/542b4f88-e33a-4a75-affc-55b58de24ffa/IGVFFI6117JAFC.yaml.gz",
106    "schema_version": "7",
107    "seqspec_of": [
108        "/sequence-files/IGVFFI7429RRDF/",
109        "/sequence-files/IGVFFI0768KSBT/"
110    ],
111    "status": "released",
112    "submitted_by": {
113        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
114        "title": "Diane Trout"
115    },
116    "summary": "seqspec of IGVFFI7429RRDF, IGVFFI0768KSBT",
117    "upload_status": "validated",
118    "uuid": "542b4f88-e33a-4a75-affc-55b58de24ffa",
119    "validate_onlist_files": true
120}