IGVFFI6072QLYU

preview
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI6072QLYU/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI6072QLYU",
10    "aliases": [
11        "leif-ludwig:measurement2303830102_scATAC_L006_seqspec"
12    ],
13    "assay_titles": [
14        "10x multiome with scMito-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v19",
22    "content_md5sum": "2efb3d6be4e6d690b2ca28780c2c0085",
23    "content_type": "seqspec",
24    "creation_timestamp": "2025-03-18T10:21:24.532378+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS3430UPOQ/",
28        "@type": [
29            "MeasurementSet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS3430UPOQ",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0002764/",
36            "term_name": "single-cell ATAC-seq"
37        },
38        "controlled_access": true,
39        "data_use_limitation_summaries": [
40            "GRU-PUB"
41        ],
42        "file_set_type": "experimental data",
43        "samples": [
44            {
45                "@id": "/primary-cells/IGVFSM1376USPX/",
46                "@type": [
47                    "PrimaryCell",
48                    "Biosample",
49                    "Sample",
50                    "Item"
51                ],
52                "accession": "IGVFSM1376USPX",
53                "classifications": [
54                    "primary cell"
55                ],
56                "sample_terms": [
57                    {
58                        "@id": "/sample-terms/CL_2000001/",
59                        "status": "released",
60                        "term_name": "peripheral blood mononuclear cell"
61                    }
62                ],
63                "status": "preview",
64                "summary": "Homo sapiens (male, 21 years) peripheral blood mononuclear cell",
65                "taxa": "Homo sapiens"
66            }
67        ],
68        "status": "preview",
69        "summary": "10x multiome with scMito-seq"
70    },
71    "file_size": 1531,
72    "gene_list_for": [],
73    "href": "/configuration-files/IGVFFI6072QLYU/@@download/IGVFFI6072QLYU.yaml.gz",
74    "input_file_for": [],
75    "integrated_in": [],
76    "lab": {
77        "@id": "/labs/leif-ludwig/",
78        "title": "Leif Ludwig, MDC"
79    },
80    "loci_list_for": [],
81    "md5sum": "11024502178c37eb2cfd1e11fc7e31da",
82    "quality_metrics": [],
83    "s3_uri": "s3://igvf-files/2025/03/18/22a3c676-1731-4de7-ac62-91331f68036e/IGVFFI6072QLYU.yaml.gz",
84    "schema_version": "7",
85    "seqspec_of": [
86        "/sequence-files/IGVFFI3174BXKJ/",
87        "/sequence-files/IGVFFI6971SVCY/",
88        "/sequence-files/IGVFFI1721FEHB/"
89    ],
90    "status": "preview",
91    "submitted_by": {
92        "@id": "/users/8164e524-79d5-4407-8a75-c0ea353d28ea/",
93        "title": "Ludwig Lab"
94    },
95    "submitted_file_name": "/data/cephfs-1/work/projects/ludwig-igvf/IGVF/NEW_seqspecs/new_seqspecs_part1/seqspecs_samples_1-5/measurement2303830102_scATAC_L006.spec.yaml.gz",
96    "summary": "seqspec of IGVFFI3174BXKJ, IGVFFI6971SVCY, IGVFFI1721FEHB",
97    "upload_status": "validated",
98    "uuid": "22a3c676-1731-4de7-ac62-91331f68036e",
99    "validate_onlist_files": true
100}