IGVFFI6062EMVH

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI6062EMVH/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI6062EMVH",
10    "aliases": [
11        "jay-shendure:seqspec2_of_set_IGVFDS7446XPVQ-2"
12    ],
13    "assay_titles": [
14        "scATAC-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011966/",
19        "component": "functional characterization"
20    },
21    "checkfiles_version": "v20",
22    "content_md5sum": "46ee3fce45d0dcc3579617b49f653384",
23    "content_type": "seqspec",
24    "creation_timestamp": "2025-03-24T19:38:28.133939+00:00",
25    "derived_manually": false,
26    "file_format": "yaml",
27    "file_set": {
28        "@id": "/measurement-sets/IGVFDS7446XPVQ/",
29        "@type": [
30            "MeasurementSet",
31            "FileSet",
32            "Item"
33        ],
34        "accession": "IGVFDS7446XPVQ",
35        "assay_term": {
36            "@id": "/assay-terms/OBI_0002764/",
37            "term_name": "single-cell ATAC-seq"
38        },
39        "data_use_limitation_summaries": [
40            "no certificate"
41        ],
42        "file_set_type": "experimental data",
43        "samples": [
44            {
45                "@id": "/in-vitro-systems/IGVFSM7126ZMPT/",
46                "@type": [
47                    "InVitroSystem",
48                    "Biosample",
49                    "Sample",
50                    "Item"
51                ],
52                "accession": "IGVFSM7126ZMPT",
53                "classifications": [
54                    "differentiated cell specimen"
55                ],
56                "sample_terms": [
57                    {
58                        "@id": "/sample-terms/EFO_0004038/",
59                        "status": "released",
60                        "term_name": "mouse embryonic stem cell"
61                    }
62                ],
63                "status": "released",
64                "summary": "Mus musculus WD44 (male) mouse embryonic stem differentiated cell specimen induced to embryoid body for 21 days (cellular sub pool: 10XlaneA)",
65                "targeted_sample_term": {
66                    "@id": "/sample-terms/UBERON_0014374/",
67                    "status": "released",
68                    "term_name": "embryoid body"
69                },
70                "taxa": "Mus musculus"
71            }
72        ],
73        "status": "released",
74        "summary": "scATAC-seq"
75    },
76    "file_size": 1221,
77    "gene_list_for": [],
78    "href": "/configuration-files/IGVFFI6062EMVH/@@download/IGVFFI6062EMVH.yaml.gz",
79    "input_file_for": [],
80    "integrated_in": [],
81    "lab": {
82        "@id": "/labs/jay-shendure/",
83        "title": "Jay Shendure, UW"
84    },
85    "loci_list_for": [],
86    "md5sum": "3511908efb41192788c4dc7eed3c5e7f",
87    "quality_metrics": [],
88    "release_timestamp": "2025-05-24T00:49:24.459288+00:00",
89    "s3_uri": "s3://igvf-files/2025/03/24/c5b4b5d6-4f31-4ddd-a239-01c364a7a4db/IGVFFI6062EMVH.yaml.gz",
90    "schema_version": "8",
91    "seqspec_of": [
92        "/sequence-files/IGVFFI2924IWFH/",
93        "/sequence-files/IGVFFI4921RBMQ/",
94        "/sequence-files/IGVFFI1783KKSX/",
95        "/sequence-files/IGVFFI7928KWSV/"
96    ],
97    "status": "released",
98    "submitted_by": {
99        "@id": "/users/73f58e9f-8f5d-4fee-a7cd-dd63c0167e4b/",
100        "title": "Beth Martin"
101    },
102    "submitted_file_name": "/net/shendure/vol1/home/martin91/IGVF/forupload/seqspecs/10XATAC/10XATAC_IGVFDS7446XPVQ-2_seqspec_v3.yaml.gz",
103    "summary": "seqspec of IGVFFI2924IWFH, IGVFFI4921RBMQ, IGVFFI1783KKSX, IGVFFI7928KWSV",
104    "upload_status": "validated",
105    "uuid": "c5b4b5d6-4f31-4ddd-a239-01c364a7a4db",
106    "validate_onlist_files": true
107}