IGVFFI5900RDDY

released
validation exempted
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI5900RDDY/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI5900RDDY",
10    "assay_titles": [
11        "lentiMPRA"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG011966/",
16        "component": "functional characterization"
17    },
18    "content_md5sum": "97e7d99342511721618ce47658c13ccb",
19    "content_type": "seqspec",
20    "creation_timestamp": "2024-12-19T12:25:03.052000+00:00",
21    "derived_from": [
22        "/tabular-files/IGVFFI6803EINC/"
23    ],
24    "description": "Sequence specification of HEK293T DNA counts",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/auxiliary-sets/IGVFDS6433JKUR/",
28        "@type": [
29            "AuxiliarySet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS6433JKUR",
34        "file_set_type": "quantification DNA barcode sequencing",
35        "status": "released",
36        "summary": "quantification DNA barcode sequencing for lentiMPRA integrating a reporter library targeting candidate cis-regulatory elements genome-wide"
37    },
38    "file_size": 1792,
39    "gene_list_for": [],
40    "href": "/configuration-files/IGVFFI5900RDDY/@@download/IGVFFI5900RDDY.yaml.gz",
41    "input_file_for": [],
42    "integrated_in": [],
43    "lab": {
44        "@id": "/labs/nadav-ahituv/",
45        "title": "Nadav Ahituv, UCSF"
46    },
47    "loci_list_for": [],
48    "md5sum": "e8fcdc2b8dcbf4cf3a338a633e168738",
49    "quality_metrics": [],
50    "release_timestamp": "2025-01-30T17:46:54.604693+00:00",
51    "s3_uri": "s3://igvf-files/2024/12/19/5edf57a8-e37d-4c1c-bad6-4324c7f8d37a/IGVFFI5900RDDY.yaml.gz",
52    "schema_version": "7",
53    "seqspec_of": [
54        "/sequence-files/IGVFFI8700AEIZ/",
55        "/sequence-files/IGVFFI5696TVWE/",
56        "/sequence-files/IGVFFI4239VWVU/",
57        "/sequence-files/IGVFFI8189BJZT/",
58        "/sequence-files/IGVFFI5550ERUF/",
59        "/sequence-files/IGVFFI7885EZPH/",
60        "/sequence-files/IGVFFI9719ABRM/",
61        "/sequence-files/IGVFFI0502IWHU/",
62        "/sequence-files/IGVFFI7430OIYQ/",
63        "/sequence-files/IGVFFI3079XQNL/",
64        "/sequence-files/IGVFFI1112FCCP/",
65        "/sequence-files/IGVFFI4073RBEH/"
66    ],
67    "status": "released",
68    "submitted_by": {
69        "@id": "/users/3ad3479d-753b-4293-9c09-c0dcabfd0ddb/",
70        "title": "Max Schubach"
71    },
72    "submitted_file_name": "\"/data/cephfs-2/unmirrored/groups/kircher/IGVF_data_submssion_TM/proximalPromotor/count/seqspec/IGVF_shendure_progReg_HEK293T_count_rep1_dna.yaml.gz\"",
73    "submitter_comment": "\"This file was previously validated by legacy checkfiles and is seqspec v0.3.0. It is now local checkfiles V17 validated, patched to be validation exempted as a part of portal-wide seqspec updating effort.\"",
74    "summary": "seqspec of IGVFFI8700AEIZ, IGVFFI5696TVWE, IGVFFI4239VWVU, IGVFFI8189BJZT, IGVFFI5550ERUF, IGVFFI7885EZPH, IGVFFI9719ABRM, IGVFFI0502IWHU, IGVFFI7430OIYQ, IGVFFI3079XQNL, IGVFFI1112FCCP, IGVFFI4073RBEH",
75    "upload_status": "validation exempted",
76    "uuid": "5edf57a8-e37d-4c1c-bad6-4324c7f8d37a",
77    "validate_onlist_files": false
78}