IGVFFI5753FSAG

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI5753FSAG/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI5753FSAG",
10    "aliases": [
11        "ansuman-satpathy:seqspec_igvf_exp12_multi_10x3_NGS3"
12    ],
13    "assay_titles": [
14        "10x multiome with MULTI-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012076/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v16",
22    "content_md5sum": "fe8943b43dbd26f1c71159650cb37822",
23    "content_type": "seqspec",
24    "creation_timestamp": "2024-09-18T02:28:13.069044+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/auxiliary-sets/IGVFDS8701GVWQ/",
28        "@type": [
29            "AuxiliarySet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS8701GVWQ",
34        "file_set_type": "lipid-conjugated oligo sequencing",
35        "samples": [
36            {
37                "@id": "/multiplexed-samples/IGVFSM7114MTSH/",
38                "@type": [
39                    "MultiplexedSample",
40                    "Sample",
41                    "Item"
42                ],
43                "accession": "IGVFSM7114MTSH",
44                "classifications": [
45                    "differentiated cell specimen",
46                    "tissue",
47                    "multiplexed sample"
48                ],
49                "disease_terms": [],
50                "modifications": [],
51                "sample_terms": [
52                    {
53                        "@id": "/sample-terms/CL_0000236/",
54                        "status": "released",
55                        "term_name": "B cell"
56                    },
57                    {
58                        "@id": "/sample-terms/UBERON_0002371/",
59                        "status": "released",
60                        "term_name": "bone marrow"
61                    }
62                ],
63                "status": "released",
64                "summary": "multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples",
65                "taxa": "Homo sapiens",
66                "treatments": []
67            }
68        ],
69        "status": "released",
70        "summary": "lipid-conjugated oligo sequencing for single-nucleus RNA sequencing assay (10x multiome with MULTI-seq), single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
71    },
72    "file_size": 1335,
73    "gene_list_for": [],
74    "href": "/configuration-files/IGVFFI5753FSAG/@@download/IGVFFI5753FSAG.yaml.gz",
75    "input_file_for": [],
76    "integrated_in": [],
77    "lab": {
78        "@id": "/labs/ansuman-satpathy/",
79        "title": "Ansuman Satpathy, Stanford"
80    },
81    "loci_list_for": [],
82    "md5sum": "e53ec9cfde10fd828d6aeb8768930d0d",
83    "quality_metrics": [],
84    "release_timestamp": "2025-03-22T00:38:46.175793+00:00",
85    "s3_uri": "s3://igvf-files/2024/09/18/45fd13a9-295b-4986-9dcf-87b199a2f6c2/IGVFFI5753FSAG.yaml.gz",
86    "schema_version": "7",
87    "seqspec_of": [
88        "/sequence-files/IGVFFI3160XDJT/",
89        "/sequence-files/IGVFFI9867JLZF/",
90        "/sequence-files/IGVFFI7987SEWS/",
91        "/sequence-files/IGVFFI2949JUQF/"
92    ],
93    "status": "released",
94    "submitted_by": {
95        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
96        "title": "Christopher Mcginnis"
97    },
98    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_multi_10x3_NGS3_multi_seqspec.yaml.gz",
99    "summary": "seqspec of IGVFFI3160XDJT, IGVFFI9867JLZF, IGVFFI7987SEWS, IGVFFI2949JUQF",
100    "upload_status": "validated",
101    "uuid": "45fd13a9-295b-4986-9dcf-87b199a2f6c2",
102    "validate_onlist_files": false
103}