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INDEXED
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ConfigurationFile
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IGVFFI5684KGUN
IGVFFI5684KGUN
released
validated
Json view
File Set
IGVFDS8054AFXK
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI4842PFEE, IGVFFI0919ZFSC, IGVFFI4139NKOX, IGVFFI3768JKDM
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp12_atac_10x3_NGS7
md5sum
c3abc50cb97cae9b08e2fce4f8ecabe9
Content MD5sum
0eeab86c9d16a48c8ad2011d8ef12112
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp12_atac_10x3_NGS7_atac_seqspec.yaml.gz
Checkfiles Version
v16
Attribution
Ansuman Satpathy, Stanford
(
HG012076
—
Ansuman Satpathy
)
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI0919ZFSC
fastq
reads
1
Barcode index
Illumina NovaSeq X
225JCCLT3
7
2.8 GB
Ansuman Satpathy, Stanford
validated
IGVFFI3768JKDM
fastq
reads
1
Read 1
Illumina NovaSeq X
225JCCLT3
7
5.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI4139NKOX
fastq
reads
1
Read 2
Illumina NovaSeq X
225JCCLT3
7
5.1 GB
Ansuman Satpathy, Stanford
validated
IGVFFI4842PFEE
fastq
reads
1
Illumina NovaSeq X
225JCCLT3
7
1.2 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM7114MTSH
MultiplexedSample
B cell
,
bone marrow
multiplexed sample: Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 6 days; Homo sapiens (female) B differentiated cell specimen induced to plasmablast for 5 days; ... and 10 more samples