IGVFFI5660HGFI

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI5660HGFI/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI5660HGFI",
10    "assay_titles": [
11        "Parse SPLiT-seq"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG012077/",
16        "component": "mapping"
17    },
18    "checkfiles_version": "v17",
19    "content_md5sum": "7922b0870effb51ec5849f77851f064a",
20    "content_type": "seqspec",
21    "creation_timestamp": "2024-09-17T22:41:03.644485+00:00",
22    "file_format": "yaml",
23    "file_set": {
24        "@id": "/measurement-sets/IGVFDS8161SJZG/",
25        "@type": [
26            "MeasurementSet",
27            "FileSet",
28            "Item"
29        ],
30        "accession": "IGVFDS8161SJZG",
31        "assay_term": {
32            "@id": "/assay-terms/OBI_0003109/",
33            "term_name": "single-nucleus RNA sequencing assay"
34        },
35        "file_set_type": "experimental data",
36        "samples": [
37            {
38                "@id": "/multiplexed-samples/IGVFSM2572CRZA/",
39                "@type": [
40                    "MultiplexedSample",
41                    "Sample",
42                    "Item"
43                ],
44                "accession": "IGVFSM2572CRZA",
45                "classifications": [
46                    "tissue",
47                    "multiplexed sample"
48                ],
49                "disease_terms": [],
50                "modifications": [],
51                "sample_terms": [
52                    {
53                        "@id": "/sample-terms/UBERON_0000007/",
54                        "status": "released",
55                        "term_name": "pituitary gland"
56                    },
57                    {
58                        "@id": "/sample-terms/UBERON_0001898/",
59                        "status": "released",
60                        "term_name": "hypothalamus"
61                    },
62                    {
63                        "@id": "/sample-terms/UBERON_0002107/",
64                        "status": "released",
65                        "term_name": "liver"
66                    }
67                ],
68                "status": "released",
69                "summary": "multiplexed sample: Mus musculus NOD/ShiLtJ (female, 72 days) pituitary gland tissue; Mus musculus CAST/EiJ (female, 69 days) pituitary gland tissue; ... and 190 more samples",
70                "taxa": "Mus musculus",
71                "treatments": []
72            }
73        ],
74        "status": "released",
75        "summary": "Parse SPLiT-seq"
76    },
77    "file_size": 1354,
78    "gene_list_for": [],
79    "href": "/configuration-files/IGVFFI5660HGFI/@@download/IGVFFI5660HGFI.yaml.gz",
80    "input_file_for": [],
81    "integrated_in": [],
82    "lab": {
83        "@id": "/labs/ali-mortazavi/",
84        "title": "Ali Mortazavi, UCI"
85    },
86    "loci_list_for": [],
87    "md5sum": "fea5ca40e597c0a676b9995ee073f15c",
88    "quality_metrics": [],
89    "release_timestamp": "2025-04-18T23:34:44.942841+00:00",
90    "s3_uri": "s3://igvf-files/2024/09/17/c09ba08f-1b6d-4b0d-9df6-bf9efe206b0a/IGVFFI5660HGFI.yaml.gz",
91    "schema_version": "7",
92    "seqspec_of": [
93        "/sequence-files/IGVFFI1856VHME/",
94        "/sequence-files/IGVFFI5021YJWG/"
95    ],
96    "status": "released",
97    "submitted_by": {
98        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
99        "title": "Diane Trout"
100    },
101    "summary": "seqspec of IGVFFI1856VHME, IGVFFI5021YJWG",
102    "upload_status": "validated",
103    "uuid": "c09ba08f-1b6d-4b0d-9df6-bf9efe206b0a",
104    "validate_onlist_files": true
105}