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INDEXED
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ConfigurationFile
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IGVFFI5584HIRU
IGVFFI5584HIRU
released
validated
Json view
File Set
IGVFDS6426PXJS
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
seqspec of IGVFFI7590FUEM, IGVFFI3957RDFF, IGVFFI7733WWGJ, IGVFFI8273DGSB
File Format
yaml
Content Type
seqspec
Aliases
ansuman-satpathy:seqspec_igvf_exp6_atac_10x1_NGS1
md5sum
0904aa78a89a6792bbad921bf6f262a1
Content MD5sum
928350f637fb21e24f1600c7eaec0182
File Size
1.4 KB
Submitted File Name
/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp6_atac_10x1_NGS1_atac_seqspec.yaml.gz
Checkfiles Version
v16
seqspec File Of
4 items
Accession
File Format
Content Type
Sequencing Run
Read Names
Sequencing Platform
Flowcell ID
Lane
Index
File Size
Lab
Upload Status
IGVFFI3957RDFF
fastq
reads
1
Read 1
Illumina NovaSeq X
223JH2LT3
5
11 GB
Ansuman Satpathy, Stanford
validated
IGVFFI7590FUEM
fastq
reads
1
Illumina NovaSeq X
223JH2LT3
5
2.4 GB
Ansuman Satpathy, Stanford
validated
IGVFFI7733WWGJ
fastq
reads
1
Read 2
Illumina NovaSeq X
223JH2LT3
5
11 GB
Ansuman Satpathy, Stanford
validated
IGVFFI8273DGSB
fastq
reads
1
Barcode index
Illumina NovaSeq X
223JH2LT3
5
6.2 GB
Ansuman Satpathy, Stanford
validated
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM9282FATG
MultiplexedSample
H1-hESC
multiplexed sample: H1-hESC differentiated cell specimen induced to islet of Langerhans for 18 days, male, Homo sapiens; H1-hESC differentiated cell specimen induced to islet of Langerhans for 7 days, male, Homo sapiens; ... and 6 more samples
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford