IGVFFI5564UCPH

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI5564UCPH/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI5564UCPH",
10    "assay_titles": [
11        "Parse SPLiT-seq"
12    ],
13    "audit": {},
14    "award": {
15        "@id": "/awards/HG012077/",
16        "component": "mapping"
17    },
18    "checkfiles_version": "v17",
19    "content_md5sum": "af59b56ce731378e260d2bed104665d8",
20    "content_type": "seqspec",
21    "creation_timestamp": "2024-09-18T18:04:50.613102+00:00",
22    "file_format": "yaml",
23    "file_set": {
24        "@id": "/measurement-sets/IGVFDS5331YSAT/",
25        "@type": [
26            "MeasurementSet",
27            "FileSet",
28            "Item"
29        ],
30        "accession": "IGVFDS5331YSAT",
31        "assay_term": {
32            "@id": "/assay-terms/OBI_0003109/",
33            "term_name": "single-nucleus RNA sequencing assay"
34        },
35        "file_set_type": "experimental data",
36        "samples": [
37            {
38                "@id": "/multiplexed-samples/IGVFSM6125CUPK/",
39                "@type": [
40                    "MultiplexedSample",
41                    "Sample",
42                    "Item"
43                ],
44                "accession": "IGVFSM6125CUPK",
45                "classifications": [
46                    "tissue",
47                    "multiplexed sample"
48                ],
49                "disease_terms": [],
50                "modifications": [],
51                "sample_terms": [
52                    {
53                        "@id": "/sample-terms/NTR_0000646/",
54                        "status": "released",
55                        "term_name": "left cerebral cortex"
56                    },
57                    {
58                        "@id": "/sample-terms/NTR_0000647/",
59                        "status": "released",
60                        "term_name": "right cerebral cortex"
61                    },
62                    {
63                        "@id": "/sample-terms/NTR_0000750/",
64                        "status": "released",
65                        "term_name": "left hippocampal formation"
66                    },
67                    {
68                        "@id": "/sample-terms/NTR_0000751/",
69                        "status": "released",
70                        "term_name": "right hippocampal formation"
71                    },
72                    {
73                        "@id": "/sample-terms/UBERON_0001388/",
74                        "status": "released",
75                        "term_name": "gastrocnemius"
76                    }
77                ],
78                "status": "released",
79                "summary": "multiplexed sample: Mus musculus NZO/H1LtJ (female, 69 days) gastrocnemius tissue; Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; ... and 190 more samples",
80                "taxa": "Mus musculus",
81                "treatments": []
82            }
83        ],
84        "status": "released",
85        "summary": "Parse SPLiT-seq"
86    },
87    "file_size": 1350,
88    "gene_list_for": [],
89    "href": "/configuration-files/IGVFFI5564UCPH/@@download/IGVFFI5564UCPH.yaml.gz",
90    "input_file_for": [],
91    "integrated_in": [],
92    "lab": {
93        "@id": "/labs/ali-mortazavi/",
94        "title": "Ali Mortazavi, UCI"
95    },
96    "loci_list_for": [],
97    "md5sum": "288e588e4d9fc4c2779c1a9584e32b80",
98    "quality_metrics": [],
99    "release_timestamp": "2025-04-19T01:41:41.660521+00:00",
100    "s3_uri": "s3://igvf-files/2024/09/18/6e2269bc-0df2-4fc3-8a11-c87a1957fd20/IGVFFI5564UCPH.yaml.gz",
101    "schema_version": "7",
102    "seqspec_of": [
103        "/sequence-files/IGVFFI0729GYOC/",
104        "/sequence-files/IGVFFI4259DBMG/"
105    ],
106    "status": "released",
107    "submitted_by": {
108        "@id": "/users/ebd1025b-e3ab-4e51-bfcd-1415f278281a/",
109        "title": "Diane Trout"
110    },
111    "summary": "seqspec of IGVFFI0729GYOC, IGVFFI4259DBMG",
112    "upload_status": "validated",
113    "uuid": "6e2269bc-0df2-4fc3-8a11-c87a1957fd20",
114    "validate_onlist_files": true
115}