IGVFFI5540ICZY

{
    "@context": "/terms/",
    "@id": "/configuration-files/IGVFFI5540ICZY/",
    "@type": [
        "ConfigurationFile",
        "File",
        "Item"
    ],
    "accession": "IGVFFI5540ICZY",
    "aliases": [
        "ansuman-satpathy:seqspec_igvf_exp0_atac_10x1_NGS1"
    ],
    "assay_titles": [
        "10x multiome with MULTI-seq"
    ],
    "audit": {},
    "award": {
        "@id": "/awards/HG012076/",
        "component": "mapping"
    },
    "checkfiles_version": "v16",
    "content_md5sum": "b66a896fd446d9c07531e4b81f0d3750",
    "content_type": "seqspec",
    "creation_timestamp": "2024-09-18T02:20:33.236936+00:00",
    "file_format": "yaml",
    "file_set": {
        "@id": "/measurement-sets/IGVFDS7482RDGX/",
        "accession": "IGVFDS7482RDGX",
        "file_set_type": "experimental data",
        "samples": [
            {
                "@id": "/multiplexed-samples/IGVFSM2682GVVD/",
                "accession": "IGVFSM2682GVVD",
                "classifications": [
                    "differentiated cell specimen",
                    "multiplexed sample"
                ],
                "disease_terms": [],
                "modifications": [],
                "sample_terms": [
                    {
                        "@id": "/sample-terms/EFO_0009747/",
                        "status": "released",
                        "term_name": "GM25256 (WTC-11)"
                    }
                ],
                "status": "released",
                "summary": "multiplexed sample: GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 3 days, male, Homo sapiens; GM25256 (WTC-11) differentiated cell specimen induced to endothelial cell for 4 days, male, Homo sapiens; ... and 21 more samples",
                "taxa": "Homo sapiens",
                "treatments": []
            }
        ],
        "status": "released",
        "summary": "single-nucleus ATAC-seq (10x multiome with MULTI-seq)"
    },
    "file_size": 1380,
    "gene_list_for": [],
    "href": "/configuration-files/IGVFFI5540ICZY/@@download/IGVFFI5540ICZY.yaml.gz",
    "input_file_for": [],
    "integrated_in": [],
    "lab": {
        "@id": "/labs/ansuman-satpathy/",
        "title": "Ansuman Satpathy, Stanford"
    },
    "loci_list_for": [],
    "md5sum": "19ce1a6858eb386072e3ef3b2996a3b5",
    "quality_metrics": [],
    "release_timestamp": "2025-03-07T01:10:22.373857+00:00",
    "s3_uri": "s3://igvf-files/2024/09/18/7f1beb8c-5357-49c2-bd10-48a32721d213/IGVFFI5540ICZY.yaml.gz",
    "schema_version": "7",
    "seqspec_of": [
        "/sequence-files/IGVFFI8652MKWJ/",
        "/sequence-files/IGVFFI1986FAVM/",
        "/sequence-files/IGVFFI5795ORFY/",
        "/sequence-files/IGVFFI3568SBTV/"
    ],
    "status": "released",
    "submitted_by": {
        "@id": "/users/353655bc-31a1-4cd9-bac3-c7d34faf722f/",
        "title": "Christopher Mcginnis"
    },
    "submitted_file_name": "/home/users/cmcginni/igvf_utils_out/seqspec/igvf_exp0_atac_10x1_NGS1_atac_seqspec.yaml.gz",
    "summary": "seqspec of IGVFFI8652MKWJ, IGVFFI1986FAVM, IGVFFI5795ORFY, IGVFFI3568SBTV",
    "upload_status": "validated",
    "uuid": "7f1beb8c-5357-49c2-bd10-48a32721d213",
    "validate_onlist_files": true
}