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IGVFFI5492QJUN

released
validated
File Set
IGVFDS0282GEHF(gRNA sequencing for mixed CRISPR TAP-seq integrating a guide (sgRNA) library targeting accessible genome regions in 29 genomic loci)
Summary
seqspec of IGVFFI9836SEKG, IGVFFI6689KNLG, IGVFFI1051BZRQ
File Format
yaml
Content Type
seqspec
Aliases
jesse-engreitz:seqspecfile_crispr_CRUDO_TAPseq_Auxin0hrs-Rep1-S4
md5sum
dc95f4dc2c0c472fc88f4833cbb84038
Content MD5sum
f9383dfa03f2ef7c5f97a7fcff87c67c
File Size
1.2 KB
Submitted File Name
/oak/stanford/groups/engreitz/Projects/Cohesin/240410_IGVF_upload/seqspec/tapseq_seqspec.out.Auxin0hrs-Rep1-S4.crispr.yaml.gz

seqspec File Of

3 items
fastq
reads
1
4
320 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
4
56 MB
Jesse Engreitz, Stanford
validated
fastq
reads
1
4
172 MB
Jesse Engreitz, Stanford
validated

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
HCT116 cell line, male, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library

Attribution

Award
HG011972
Principal Investigator(s)
Contact P.I.
Jesse Engreitz
Lab
Jesse Engreitz, Stanford