IGVFFI5470ZPWT

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/configuration-files/IGVFFI5470ZPWT/",
4    "@type": [
5        "ConfigurationFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI5470ZPWT",
10    "aliases": [
11        "buenrostro-bernstein:SS-LS_8537_seqspec"
12    ],
13    "assay_titles": [
14        "SHARE-seq"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG011986/",
19        "component": "mapping"
20    },
21    "checkfiles_version": "v20",
22    "content_md5sum": "9d825c65825fedddf6c7404d69ba188b",
23    "content_type": "seqspec",
24    "creation_timestamp": "2025-03-28T18:21:42.417476+00:00",
25    "file_format": "yaml",
26    "file_set": {
27        "@id": "/measurement-sets/IGVFDS2676HFQT/",
28        "@type": [
29            "MeasurementSet",
30            "FileSet",
31            "Item"
32        ],
33        "accession": "IGVFDS2676HFQT",
34        "assay_term": {
35            "@id": "/assay-terms/OBI_0002764/",
36            "term_name": "single-cell ATAC-seq"
37        },
38        "file_set_type": "experimental data",
39        "samples": [
40            {
41                "@id": "/in-vitro-systems/IGVFSM7503LASU/",
42                "@type": [
43                    "InVitroSystem",
44                    "Biosample",
45                    "Sample",
46                    "Item"
47                ],
48                "accession": "IGVFSM7503LASU",
49                "classifications": [
50                    "pooled cell specimen",
51                    "differentiated cell specimen"
52                ],
53                "sample_terms": [
54                    {
55                        "@id": "/sample-terms/EFO_0004905/",
56                        "status": "released",
57                        "term_name": "induced pluripotent stem cell"
58                    }
59                ],
60                "status": "released",
61                "summary": "Homo sapiens induced pluripotent stem pooled differentiated cell specimen induced to endodermal cell for 2 days (cellular sub pool: SS-PKR 173)",
62                "targeted_sample_term": {
63                    "@id": "/sample-terms/CL_0000223/",
64                    "status": "released",
65                    "term_name": "endodermal cell"
66                },
67                "taxa": "Homo sapiens"
68            }
69        ],
70        "status": "released",
71        "summary": "single-cell ATAC-seq (SHARE-seq)"
72    },
73    "file_size": 1332,
74    "gene_list_for": [],
75    "href": "/configuration-files/IGVFFI5470ZPWT/@@download/IGVFFI5470ZPWT.yaml.gz",
76    "input_file_for": [],
77    "integrated_in": [],
78    "lab": {
79        "@id": "/labs/jason-buenrostro/",
80        "title": "Jason Buenrostro, Broad"
81    },
82    "loci_list_for": [],
83    "md5sum": "f7fe8b3d037534c014436d7928b47341",
84    "quality_metrics": [],
85    "release_timestamp": "2025-04-10T21:04:31.696983+00:00",
86    "s3_uri": "s3://igvf-files/2025/03/28/58d985a4-1e9f-4da3-9c64-acc1d4a17b91/IGVFFI5470ZPWT.yaml.gz",
87    "schema_version": "7",
88    "seqspec_of": [
89        "/sequence-files/IGVFFI6476TXDM/",
90        "/sequence-files/IGVFFI9017OKGQ/",
91        "/sequence-files/IGVFFI2163PCNB/"
92    ],
93    "status": "released",
94    "submitted_by": {
95        "@id": "/users/c0838247-5022-46cf-a8fa-426e73bf4c94/",
96        "title": "Siddarth Wekhande"
97    },
98    "submitted_file_name": "gs://sw-igvf-submission/seqspec-v3/cirm/IGVFFI6476TXDM_seqspec.yaml.gz",
99    "summary": "seqspec of IGVFFI6476TXDM, IGVFFI9017OKGQ, IGVFFI2163PCNB",
100    "upload_status": "validated",
101    "uuid": "58d985a4-1e9f-4da3-9c64-acc1d4a17b91",
102    "validate_onlist_files": true
103}